View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_7 (Length: 536)
Name: NF8172_high_7
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 376
Target Start/End: Original strand, 31883752 - 31884108
Alignment:
| Q |
19 |
tgttagggctacttctttgcacttgatggcctagacttttcgagtgctttcctgtgttagtactgaggaagattcgtcgcaattggattgatcatgatgc |
118 |
Q |
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| T |
31883752 |
tgttagggctacttctttgcacttgatggcctagacttt-ctagtgctttcttgtgttggtactgaggaagattcgtcgcaattggattgatcatgatgc |
31883850 |
T |
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| Q |
119 |
ttggggttttgttggatctcttgaagaaccgttggattgaacgagtctttttcaacttgatcgtttgattgttattttgtccgtggattgttggattgag |
218 |
Q |
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| T |
31883851 |
ttggggttttgttagatctcttgaagaaccgttggattgaacgagtctttttcaacttgatcgtttgattgttatattgtttgtggagtgttggattgag |
31883950 |
T |
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| Q |
219 |
gttgatattctttgttgtcaaccattgagaccaccatattgttttgtggatggttggactggatggatgactcctttgtccatccaaacattcttttgtt |
318 |
Q |
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| T |
31883951 |
gttgatattctttgttgtcaaccgttgagaccaccatattgttttgtggatggttggactggatggatgactcccttgtccatccaaacattcttttgtt |
31884050 |
T |
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| Q |
319 |
agagagtatcaaagattttggaggggtattcgaaacacttatacactcacttttgaag |
376 |
Q |
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| T |
31884051 |
agagagtataaaagattttggaggggtattcgaaacacttatacaatcacttttgaag |
31884108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 9069523 - 9069592
Alignment:
| Q |
392 |
aaatgataaatggacacaaatttgttcacacaaatacaacaccg--tatttactattcataaatactcca |
459 |
Q |
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| T |
9069523 |
aaatgataaacaaacacaaatttgttgacacaaatacaactccgtatatgtactgttcataaatactcca |
9069592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 438
Target Start/End: Complemental strand, 14245327 - 14245268
Alignment:
| Q |
379 |
ttttattttagagaaatgataaatggacacaaatttgttcacacaaatacaacaccgtat |
438 |
Q |
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| T |
14245327 |
ttttaatttagagtattgataactggacacaaatctcttgacacaaatacaacaccgtat |
14245268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23972109 - 23972143
Alignment:
| Q |
21 |
ttagggctacttctttgcacttgatggcctagact |
55 |
Q |
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| T |
23972109 |
ttagggctacttcattgcacttgatggcctagact |
23972143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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