View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_high_9 (Length: 452)
Name: NF8172_high_9
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 50555058 - 50554610
Alignment:
| Q |
17 |
tggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcacctat |
116 |
Q |
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| T |
50555058 |
tggtggtgtgctcatttgacattgattatgaagaaattgattatttagtgatgtggtgaaagagcttctagtgaccatatcctcagctaacttcacctat |
50554959 |
T |
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| Q |
117 |
tataatagtatatgttagttaatttcttcaatcattgatatttattttcgtatgcataatta-------agctcactgtataccttagctctcaaagctt |
209 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
50554958 |
tataatagtatatgttagttaatttcttcaatcagtgatatttattttcgtatgaataattatataataagctcactgtataccttagctctcaaagctt |
50554859 |
T |
|
| Q |
210 |
ctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattttccagtttcag |
309 |
Q |
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| T |
50554858 |
caacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatcagtaaactgtttatatagtgttgcattttccagtttcag |
50554759 |
T |
|
| Q |
310 |
tttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg-------------------ctcacaaaagattatgctccaaaaca |
390 |
Q |
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| T |
50554758 |
tttttcaacctgagagatcaaaattcaaatgggaagaaaatgatgactacttatgctgtttagctgttatacatctcacaaaagattatgctccaaaaca |
50554659 |
T |
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| Q |
391 |
ttgactagttacctgagcctcaagttcagacaaatgcgcttgttttctc |
439 |
Q |
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| T |
50554658 |
ttgactagttacctgagcctcaagttcagacaaatgcgcttgttttctc |
50554610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 177 - 364
Target Start/End: Complemental strand, 50817513 - 50817326
Alignment:
| Q |
177 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
276 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50817513 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50817414 |
T |
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| Q |
277 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
364 |
Q |
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| T |
50817413 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50817326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 177 - 364
Target Start/End: Original strand, 50858351 - 50858538
Alignment:
| Q |
177 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
276 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
50858351 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50858450 |
T |
|
| Q |
277 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
364 |
Q |
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| T |
50858451 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 50817622 - 50817528
Alignment:
| Q |
21 |
ggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcaccta |
115 |
Q |
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| T |
50817622 |
ggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttctagtgactatatgcttgactaacttcaccta |
50817528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 50858242 - 50858336
Alignment:
| Q |
21 |
ggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagctaacttcaccta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |||| || ||||||||||||| |
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| T |
50858242 |
ggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttctagtgactatatgcttgactaacttcaccta |
50858336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 50817093 - 50817036
Alignment:
| Q |
382 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctc |
439 |
Q |
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| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctc |
50817036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 50858771 - 50858828
Alignment:
| Q |
382 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctc |
439 |
Q |
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||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctc |
50858828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 1130524 - 1130656
Alignment:
| Q |
188 |
tataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatata |
287 |
Q |
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| T |
1130524 |
tataccttagctctcaaagcttcaacatcggattttagtactcggttgttagtgttagcatcgcgaaattgttggctggcatctgtaagctgcttaaata |
1130623 |
T |
|
| Q |
288 |
gtgttgcattttccagtttcagtttttcaacct |
320 |
Q |
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| T |
1130624 |
ggcttgcattttccagcctcaattgttcaacct |
1130656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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