View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_11 (Length: 445)
Name: NF8172_low_11
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 44884287 - 44884712
Alignment:
| Q |
1 |
aatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactcatctatcatattctggaggtcttcatcagtggaaacagtgatgaggt |
100 |
Q |
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| T |
44884287 |
aatctgagtcgagaaggtgaaggagaagggtttgaagacaaacgatcatactcatctatcatattctggaggtcttcatcagtggaaacagtgatgaggt |
44884386 |
T |
|
| Q |
101 |
tgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttcttccatgaaggagagtgcgagagaggtgagaaaagaggtgtgataaggaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44884387 |
tgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttcttccatgaaggagagtgcgagagaggtgagaaaagaggtgtgataaggaaga |
44884486 |
T |
|
| Q |
201 |
gtgacggtcaacggcgacgatacgagtgtcgccaccaacgtagtagagggagttgtcacgtggcatgatgtggccaccgtagctgcacatgaggcggagt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44884487 |
gtgacggtcaacggcgacgatacgagtgtcgccaccgacgtagtagagggagttgtcacgtggcatgatgtggccgccgtagctgcacatgaggcggagt |
44884586 |
T |
|
| Q |
301 |
ttggagccaggcacgtgagggatgaggaggagatcagatgtgtcattatgataatgatgacgaggagaggaaggcagtgctggcaccgaatcagggaaag |
400 |
Q |
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| T |
44884587 |
ttggagccaggcacgtgagggatgaggaggagatcagatgtgtcattatgataatgatgacgaggagaggaaggcagtgctgacaccgattcagggaaag |
44884686 |
T |
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| Q |
401 |
ggagagggtgctgtttttgtgatatg |
426 |
Q |
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| T |
44884687 |
ggagagggtgctgtttttgtgatatg |
44884712 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9019429 - 9019385
Alignment:
| Q |
1 |
aatctgagtcgagaaggtgaaggagaagggtttgaagacaaacga |
45 |
Q |
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| T |
9019429 |
aatctgagtcgagaaggggaaggagacgggtttgaagacaaacga |
9019385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 30769922 - 30769868
Alignment:
| Q |
94 |
atgaggttgtcaaggtcttcattgggaagatggtacttgagagtgaaaggtcttc |
148 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||| || ||||||| |
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| T |
30769922 |
atgaggttatcaaggtcttcatttggaagctggtacttgagagtaaagggtcttc |
30769868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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