View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_12 (Length: 436)
Name: NF8172_low_12
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 20163579 - 20163161
Alignment:
| Q |
18 |
ctttctacatgagaggaagaccttggggacatttgaaaaatcttgtaggcaggtcggtgttgctaaaataatttattgtctatccttttttcaatatttc |
117 |
Q |
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| T |
20163579 |
ctttctacatgagagcaagaccttggggacatttgaaaaatcttgtaggcaggtaggtgttgctaaaataatttattgtctatccttttttcaatatttc |
20163480 |
T |
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| Q |
118 |
ccaatttgttagtaaaatgctaggattgtccttcttgaaatttcgtgaattggattagcatatgaattgcatttgcttatctaatccagtatcagttgcc |
217 |
Q |
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| T |
20163479 |
ccaatttgttagtaaaatgctaggattgtccttcttggaatttcgtgaattggattaccatatgaattgcatttgcttatccaatccagtatcagttgcc |
20163380 |
T |
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| Q |
218 |
tgcctcctgacgttcatcattgattaactgtagattcttctattcaattgcttagatgtgagaaatcccaaaattttgcttccacagttagtgaacgaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20163379 |
tgcctcctgacgttcatcattgattaactgtagattcttctattcaattgcttagatgtgagaaatcccaaaattttgcttccacagttagtgaacgaat |
20163280 |
T |
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| Q |
318 |
gtgctttgtcaggtattcctacttcagttaacctggtacttttttattttgactttctgtcagtaaagctattttcattaagcttgacttttccttcatt |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
20163279 |
gtgctttgtcaggtattcctacttcagttaacctggtacttttttattttgactttctgtcagaaaagctactttcattaagcttgacttttccttcatt |
20163180 |
T |
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| Q |
418 |
gtatatataatttaatatt |
436 |
Q |
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| T |
20163179 |
gtatatataatttaatatt |
20163161 |
T |
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