View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_14 (Length: 422)
Name: NF8172_low_14
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 11676413 - 11676017
Alignment:
| Q |
18 |
aaatatcgggtccaataaaaaattactgtcttaaatttgagtaaatcaacttggtgaaaatgattagagagcaaaatacttcatttctatgtgaattatg |
117 |
Q |
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| T |
11676413 |
aaatatcgggtccaataaaaaattactgtcttaaatttgagtaaatcaacttggtgaaaatgattagagagcgaaatacttcatttctatgtgaattatg |
11676314 |
T |
|
| Q |
118 |
ctgctgatacttcttgcaaaataatacattatcatttagagaagtaggctttgaataatttgcagttatatgtttatcatttataatgttaattggcaaa |
217 |
Q |
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| T |
11676313 |
ctgctgatacttcttgcaaaataatacattatcatttagagaagtaggctttgaataatttgcagttatatgttaatcatttataatgttaattggcaaa |
11676214 |
T |
|
| Q |
218 |
tggaaattaagatgttgcttctctttattggcaa-annnnnnnncctttaaaactgtgtctacactaataactgatttctaataccaggccgcatccaaa |
316 |
Q |
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| T |
11676213 |
tggaaattaagatgttgcttccctttattggcaatttttttttccctttaaaactgtgtctacactaataactgatttcttataccaggccgcatccaaa |
11676114 |
T |
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| Q |
317 |
tgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctgaattgattccacctagaacaattgaaccaatggagtataat |
413 |
Q |
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| T |
11676113 |
tgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctgaattgattccacctagaacaattgaaccaatggagtataat |
11676017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 11684150 - 11683752
Alignment:
| Q |
18 |
aaatatcgggtccaataaaaaattac---tgtcttaaatttgagtaaatcaacttggtgaaaatgattagagagcaaaatacttcatttctatgtgaatt |
114 |
Q |
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| T |
11684150 |
aaatatcgggtccaataaaaaatcatcaatgtcttaaattttagtaaatcaacttggtgaaaatgattagatagcaaaatacttcatttctatattaaat |
11684051 |
T |
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| Q |
115 |
atgctgctgatacttcttgcaaaataatacattatcatttagagaagtaggctttgaataatttgcagttatatgtttatcatttataatgtta-attgg |
213 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| |||| |
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| T |
11684050 |
atgctgctggtacttcttgcaaaa-aatacattatcatttagagaagtaggctttgaataatttgcagttataggtttatcatatagaatgttactttgg |
11683952 |
T |
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| Q |
214 |
caaatggaaattaagatgttgcttctctttattggcaa-annnnnnnncctttaaaactg--tgtctacactaataactgatttctaataccaggccgca |
310 |
Q |
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| T |
11683951 |
taaatggaaattaagatgttgcttctctttatcggcaattttttttttcttttaaaactgtctgtctacactaataactgatttctaataccaggccaca |
11683852 |
T |
|
| Q |
311 |
tccaaatgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctgaattgattccacctagaacaattgaaccaatggagtat |
410 |
Q |
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| T |
11683851 |
tccaaatgaatgttccggaagtgatctagacggggacatatactttgtttgctgggattctgaattgattccacctagaacaattgaaccaatggagtat |
11683752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 273 - 410
Target Start/End: Original strand, 11630367 - 11630504
Alignment:
| Q |
273 |
tgtctacactaataactgatttctaataccaggccgcatccaaatgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctg |
372 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
11630367 |
tgtctacactcataactgatttctaataccaggccacatccaaatgaatgttccggaagtgatctagacggggacatctactttgtttgttgggattctg |
11630466 |
T |
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| Q |
373 |
aattgattccacctagaacaattgaaccaatggagtat |
410 |
Q |
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| T |
11630467 |
aattgattccacccaagacaattgatccaatggagtat |
11630504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 289 - 410
Target Start/End: Original strand, 11638755 - 11638876
Alignment:
| Q |
289 |
tgatttctaataccaggccgcatccaaatgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctgaattgattccacctag |
388 |
Q |
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||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11638755 |
tgatttctaataccaggccacatccaaacgagtgttccggaagtgatctagatggggacatctactttgtttgttgggattctgaattgattccaccctt |
11638854 |
T |
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| Q |
389 |
aacaattgaaccaatggagtat |
410 |
Q |
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| T |
11638855 |
gacaattgatccaatggagtat |
11638876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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