View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_15 (Length: 412)
Name: NF8172_low_15
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 190 - 412
Target Start/End: Complemental strand, 24175649 - 24175427
Alignment:
| Q |
190 |
caagttccaaattaactcatctttcactacaaccattgatttcatttgatttgattacaaggttggtacaataataacctgaaaatttggagtagcagtt |
289 |
Q |
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| T |
24175649 |
caagttccaaattaactcatctttcactacaaccattgatttcatttgatttgattacaaggttggtacaataataacctgaaaatttggagtagcagtt |
24175550 |
T |
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| Q |
290 |
tgagaagaagataaagacaaagaatctttatttctctgagaagagcttctccaaaacccagtttcataaaacgtattccacatctccttctctaattcca |
389 |
Q |
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| T |
24175549 |
tgagaagaagataaagacaaagaatctttattcctctgagaagagcttctccaaaacccagtttcataaaacgtattccacatctccttctccaattcca |
24175450 |
T |
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| Q |
390 |
caacatctttctcttcttcttct |
412 |
Q |
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|||||||||| |||||||||||| |
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| T |
24175449 |
caacatctttatcttcttcttct |
24175427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 24175796 - 24175714
Alignment:
| Q |
43 |
gtggtattccatagaatatgcaaaaagtataccatgattctggcatatctgccgtgataacaaaatgcattttaaactgtaag |
125 |
Q |
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|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
24175796 |
gtggtattacatagaatatgcaaaaactacaccatgattctggcatatctgccgtgataacaaaatgcatttcaaattgtaag |
24175714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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