View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_16 (Length: 408)
Name: NF8172_low_16
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_16 |
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| [»] chr4 (8 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Original strand, 36296148 - 36296536
Alignment:
| Q |
17 |
agatacctccattgaagttctcttacaaaccagatttggcatgacataaattcattgcttgcttgtttttctctctcttatgttccatactgggaatgca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36296148 |
agatacctccattgaagttctcttacaaaccagatttggcatgacataaattcattgcttgcttgtttttctctctcttatgttccatactgggaatgca |
36296247 |
T |
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| Q |
117 |
aacaacatatcaaattaattttccaagggaaatacaagtgaatcgcaactgtttgaagaacaaaaactaattatttatttatgcatcaacatttcacata |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36296248 |
aacaacatctcaaattaattttccaagggaaatacaagtgaatcgcaactgtttgaagaacaagaactaattatttatttatgcatcaacatttcacata |
36296347 |
T |
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| Q |
217 |
taacatgataaaaactcacacatcacacaaaaggtaagcattaaagccaaactctcaagtacacgaatatttaaagcaacataatgacagaactcattct |
316 |
Q |
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| T |
36296348 |
tgatatgataacaactcacacatcacac--aaggtaagcattaaagccaaactct-gagtacacgaatatttaaagcaacataatgacagaactcattct |
36296444 |
T |
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| Q |
317 |
tagaaagttcaaccagagatctgaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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| T |
36296445 |
tagaaagttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
36296536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 35072678 - 35072763
Alignment:
| Q |
323 |
gttcaaccagagatctgaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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| T |
35072678 |
gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccat |
35072763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 184 - 408
Target Start/End: Complemental strand, 35098442 - 35098208
Alignment:
| Q |
184 |
taattatttatttatgcatcaacatttcacatataacatgataaaa-actcacac----atcacaca--aaaggtaagcattaaagccaa-actctcaag |
275 |
Q |
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|||| |||||||||| || ||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||||| | |||| ||||| ||| |
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| T |
35098442 |
taataatttatttattcagcaacatttcacatatgacatgataactcactcacacccacatcacacacaaaaggtaagcattacaaccaacactctgaag |
35098343 |
T |
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| Q |
276 |
tacacgaata--tttaaagcaacataat----gacagaactcattcttagaaagttcaaccagagatctgaatagacttaacatcaggtttcttaacttc |
369 |
Q |
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| T |
35098342 |
gacgcgaataatttttaagcaacataataacagacagaactcattat----aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctc |
35098247 |
T |
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| Q |
370 |
ttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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| T |
35098246 |
ttcttttggaacagtaacagtgagaacaccattctccat |
35098208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 321 - 408
Target Start/End: Complemental strand, 35098006 - 35097919
Alignment:
| Q |
321 |
aagttcaaccagagatctgaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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|||||||||||||||| | ||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35098006 |
aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccat |
35097919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 35099511 - 35099439
Alignment:
| Q |
17 |
agatacctccattgaagttctcttacaaaccagatttggcatgacataaattcattgcttgcttgtttttctct |
90 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||| |
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| T |
35099511 |
agatacctccattgaagtgctcttacaaaccagatttgtcatgacatgaattaattgcttgctt-tttttctct |
35099439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 407
Target Start/End: Original strand, 36935859 - 36935939
Alignment:
| Q |
327 |
aaccagagatctgaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctcca |
407 |
Q |
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| T |
36935859 |
aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctcca |
36935939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 36961521 - 36961469
Alignment:
| Q |
354 |
caggtttcttaacttcttcttttggaacagttacagtgagaacaccattctcc |
406 |
Q |
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||||||| || |||||||| || |||| ||||||||||||||||||||||||| |
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| T |
36961521 |
caggttttttcacttcttccttaggaatagttacagtgagaacaccattctcc |
36961469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 408
Target Start/End: Original strand, 36953663 - 36953716
Alignment:
| Q |
353 |
tcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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||||| |||| ||| |||||||| |||||||||||| |||||||||||||||||| |
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| T |
36953663 |
tcaggcttctaaacctcttctttaggaacagttaca--gagaacaccattctccat |
36953716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 24014177 - 24014262
Alignment:
| Q |
323 |
gttcaaccagagatctgaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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| T |
24014177 |
gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccat |
24014262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 24040733 - 24040819
Alignment:
| Q |
322 |
agttcaaccagagatctgaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccat |
408 |
Q |
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|||| |||||||||| | ||| | ||| || | ||| |||||||||||||| || || ||||| |||||||||| |||||||||||| |
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| T |
24040733 |
agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccat |
24040819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 6170273 - 6170345
Alignment:
| Q |
17 |
agatacctccattgaagttctcttacaaaccagatttggcatgacataaattcattgcttgcttgtttttctct |
90 |
Q |
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|||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||| |
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| T |
6170273 |
agatacctccattgaagtgctcttacaaaccagatttgtcatgacatgaattaattgcttgctt-tttttctct |
6170345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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