View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_18 (Length: 387)
Name: NF8172_low_18
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 52 - 385
Target Start/End: Original strand, 14665378 - 14665711
Alignment:
| Q |
52 |
aattggggttaacttgctgctgcaaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc |
151 |
Q |
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| T |
14665378 |
aattggggttaacttgctgctgcgaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc |
14665477 |
T |
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| Q |
152 |
tctacattataccaaatcttgttgttcctttgtttccaaatgctcgatataaaaactgcaaaattggcaatttgttctcgattaaaattctgcaacatgc |
251 |
Q |
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| T |
14665478 |
tctacattataccaaatcttgttgttcctttgtttccaaatgctcgatataaaaactgcaaaattggcaatttgttctcgattaaaattctgcaacatgc |
14665577 |
T |
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| Q |
252 |
agagttttgttttgtttcggattagatttgaaaaccactatactaccatctcataaccattttgtaaccaataagtaacgttgacagttattaagttaca |
351 |
Q |
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| T |
14665578 |
agagttttgttttgtttcggattagatttgaaaaccactatactaccaactcataaccattttgtaaccaataagtaacgttgacagttattaagttaca |
14665677 |
T |
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| Q |
352 |
tagtaagaaattcattgcacaagaaattattgta |
385 |
Q |
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| T |
14665678 |
tagtaagaaattccttgcacaaaaagttattgta |
14665711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 14687941 - 14687894
Alignment:
| Q |
338 |
gttattaagttacatagtaagaaattcattgcacaagaaattattgta |
385 |
Q |
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| T |
14687941 |
gttattaagttacatagtaagaaattacttgcacaagaagttattgta |
14687894 |
T |
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