View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_2 (Length: 804)

Name: NF8172_low_2
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_2
NF8172_low_2
[»] chr8 (1 HSPs)
chr8 (46-711)||(37770137-37770805)


Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 46 - 711
Target Start/End: Complemental strand, 37770805 - 37770137
Alignment:
Q  46 gagtcattaaactctctcaatgtattacagatgtcgtacacgtttatttctgctcataaacgaatgtttttatccaccctccaaataaaaagaatgtgaa 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37770805 gagtcattaaactctctcaatgtattacagatgtcgtacacgtttatttctgctcataaacgaatgtttttatccaccctcccaataaaaagaatgtgaa 37770706  T
Q  146 tgcagttgcatatttaacaattaaatcttatcttacatagcgagtgacgagcaaatataagaatgtaccttgtgaatcaggtaacacaaatgaacacagg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37770705 tgcagttgcatatttaacaattaaatcttatcttacatagcgagtgacgagcaaatataagaatgtaccttgtgaatcaggtaacacaaatgaacacagg 37770606  T
Q  246 caacccaacagcaatagtacaaataagaagtccatatctacttgctggcattaaccactgatttaatgaccatgatcctcaattatcatatgagaaatct 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37770605 caacccaacagcaatagtacaaataagaagtccatatctacttgctggcattaaccactgatttaatgaccatgatcctcaattatcatatgagaaatct 37770506  T
Q  346 tcatcactgcagtgtagaatcataaatatattaagcattgaaaactgattnnnnnnnncaaataaagccgtataatataacgataaacaataacaatagg 445  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||        ||||||||||||||||||||||||||||||||||||||||||    
T  37770505 tcatcactgcagtgtagaatcataaatatattaagcattgaaaattgatt-aaaaaaacaaataaagccgtataatataacgataaacaataacaatagg 37770407  T
Q  446 aaataaactactagagcaatgaaaacaagtatattgcatgacggagtagttctaaaaaggaaagtcttatttctgttatattctgttctgttcttctaga 545  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37770406 aaataaactactagagcaatgaaaacaagtatattgcatgacggagtagttctaaaaaggaaagtcttatttctgttatattctattctgttcttctaga 37770307  T
Q  546 aaaaagcgttattgcatcagtgagcagttctaaaaaaggaaaattaagctagaaaagttgataaacatcaatgtaaaatctaagaattgtttttgcttcc 645  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37770306 aaaaagtgttattgcatcagtgagcagttctaaaaaaggaaaattaagctagaaaagttaataaacatcaatgtaaaatctaagaattgtttttgcttcc 37770207  T
Q  646 tttta----tgtttggttggttggataaggtacagaaaactaggaacagaagaaacaacagtattgaatc 711  Q
    |||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37770206 ttttatgtttgtttggttggttggataaggtacagaaaactaggaacagaagaaacaacagtattgaatc 37770137  T

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