View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_22 (Length: 375)
Name: NF8172_low_22
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 89 - 357
Target Start/End: Complemental strand, 13281408 - 13281142
Alignment:
| Q |
89 |
aatcatataatgttaaacctctagtatgaaagctttaggcttagactacaaaaacaactannnnnnncattccttcaatcggcgaagatttctcttgtaa |
188 |
Q |
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| T |
13281408 |
aatcatataatgttaaacctctagtatgaaagctttaggcttagactacaaaaacaactattttt--cattccttcaatcggcgaagatttttcttgtaa |
13281311 |
T |
|
| Q |
189 |
attttgatgtcacaaacacctccttttcctttaacatcaatatcatcaaccactccggtagttaaatcaaaacaaactagtttagatttatcatattttt |
288 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13281310 |
attttgatgtcacaaatacctccttttcctttaacatcaatatcatcaaccactccggtagttaaatcaaaacaaactagtttagatttatcatattttt |
13281211 |
T |
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| Q |
289 |
tcttgaagaatatattgcctttcttcccgactgcgataggatacaaattggaagacaaaggtccaacat |
357 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
13281210 |
tcttgaagaatatattgcctttcttcccaactgcaataggatacaaattggaagacaaaggtccaacat |
13281142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 28995167 - 28995114
Alignment:
| Q |
217 |
ctttaacatcaatatcatcaaccactccggtagttaaatcaaaacaaactagtt |
270 |
Q |
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||||||||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
28995167 |
ctttaacatcaatctcctcaatcactccggtagttaaatcaaaacaaactagtt |
28995114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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