View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_23 (Length: 371)

Name: NF8172_low_23
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_23
NF8172_low_23
[»] chr5 (12 HSPs)
chr5 (1-353)||(9827136-9827488)
chr5 (1-353)||(9835505-9835857)
chr5 (2-180)||(10587827-10588005)
chr5 (3-134)||(10612393-10612524)
chr5 (5-137)||(10746424-10746556)
chr5 (7-113)||(10581682-10581788)
chr5 (8-116)||(10565691-10565799)
chr5 (2-125)||(7193688-7193811)
chr5 (33-119)||(10651613-10651699)
chr5 (44-135)||(10659480-10659571)
chr5 (49-140)||(19605256-19605347)
chr5 (6-137)||(10716381-10716512)
[»] chr6 (4 HSPs)
chr6 (1-137)||(12958738-12958874)
chr6 (3-137)||(12907852-12907986)
chr6 (1-137)||(12900233-12900369)
chr6 (1-137)||(12932939-12933075)
[»] chr2 (1 HSPs)
chr2 (6-137)||(17922810-17922941)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 9827488 - 9827136
Alignment:
Q  1 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9827488 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaa 9827389  T
Q  101 aagaaagaatgaacatagtagatgttactagagagctaaatttaatccgaacaatctttcttgaaggtgagacaaactaaggttttacatttatcttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9827388 aagaaagaatgaacatagtagatgttactagagagctaaatttaatccgaacaatctttcttgaaggtgagacaaactaaggttttacatttatcttttc 9827289  T
Q  201 atttatcttcctataaatttcaaatttcctgaactgaaatatacaaagtaatgagctacttctctaatttcaggtgttcatgcctcgtaagtaattaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||    
T  9827288 atttatcttcctataaatttcaaatttcctgaactgaaatatacaaagtaatgggctacttctctaatttcaggtgttcatgcctcgcgagtaattaaac 9827189  T
Q  301 cagaaataaatttccgccatcatttggaatagagacgtgtatgcagtatgttg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9827188 cagaaataaatttccgccatcatttggaatagagacgtgtatgcagtatgttg 9827136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 9835857 - 9835505
Alignment:
Q  1 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9835857 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggacttgcctgttcaagagaatcaccaa 9835758  T
Q  101 aagaaagaatgaacatagtagatgttactagagagctaaatttaatccgaacaatctttcttgaaggtgagacaaactaaggttttacatttatcttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9835757 aagaaagaatgaacatagtagatgttactagagagctaaatttaatccgaacaatctttcttgaaggtgagacaaactaaggttttacatttatcttttc 9835658  T
Q  201 atttatcttcctataaatttcaaatttcctgaactgaaatatacaaagtaatgagctacttctctaatttcaggtgttcatgcctcgtaagtaattaaac 300  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  9835657 atttatcctcctataaatttcaaatttcctgaactgaaatatacaaagtaatgagctacttctctaatttcaggtgttcatgcctcgcgagtaattaaac 9835558  T
Q  301 cagaaataaatttccgccatcatttggaatagagacgtgtatgcagtatgttg 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9835557 cagaaataaatttccgccatcatttggaatagagacgtgtatgcagtatgttg 9835505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 180
Target Start/End: Complemental strand, 10588005 - 10587827
Alignment:
Q  2 caatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaa 101  Q
    |||||||||||||| ||| |||||||||||||||||||    |||| |||||||||||| || |||||||||| ||||| |||||||  |||||||||||    
T  10588005 caatagaagatggacataatgagaatcttattccagctaaggagaagtgcttagtttcacttctaaggattggacttgcttgttcaatggaatcaccaaa 10587906  T
Q  102 agaaagaatgaacatagtagatgttactagagagctaaatttaatccgaacaatctttcttgaaggtgagacaaactaa 180  Q
    ||||||||||| |||| |||||||||| |||||||||||| ||||| ||||  ||||| |||| || ||||||||||||    
T  10587905 agaaagaatgagcataatagatgttacaagagagctaaatataatcagaacggtctttgttgatggcgagacaaactaa 10587827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 10612393 - 10612524
Alignment:
Q  3 aatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaa 102  Q
    |||| |||||||||| ||||||||||||||||||  | ||||| | |||||||||||| |||| |||||||| |||   |||||||  |||||||| |||    
T  10612393 aatacaagatggaaagagtgagaatcttattccaagtttaaaggagtgcttagtttcactttttaggattggacttctttgttcaatggaatcacccaaa 10612492  T
Q  103 gaaagaatgaacatagtagatgttactagaga 134  Q
    ||||||||||| || || ||||||||||||||    
T  10612493 gaaagaatgaatattgtggatgttactagaga 10612524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 10746556 - 10746424
Alignment:
Q  5 tagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaaga 104  Q
    ||||||||||||| | |||||||||||||||| |||||||  | || ||||||||| |||| |||||||| |||   ||| |||  ||||||||||||||    
T  10746556 tagaagatggaaacaatgagaatcttattccaactgtaaaagagtgtttagtttcactttttaggattggacttatttgtacaattgaatcaccaaaaga 10746457  T
Q  105 aagaatgaacatagtagatgttactagagagct 137  Q
    ||||||||| |  || ||||| |||||||||||    
T  10746456 aagaatgaatactgtggatgtcactagagagct 10746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 7 - 113
Target Start/End: Original strand, 10581682 - 10581788
Alignment:
Q  7 gaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaaa 106  Q
    ||||||||||||  |||||||||||||||||||| |||| | |||||||||||| |||| |||||||| |||   |||||||  || |||||||||||||    
T  10581682 gaagatggaaatcttgagaatcttattccagctgcaaaggagtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaa 10581781  T
Q  107 gaatgaa 113  Q
    || ||||    
T  10581782 gactgaa 10581788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 10565691 - 10565799
Alignment:
Q  8 aagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaaag 107  Q
    |||||||||||  |||||||||||||||| ||| |||| | |||||||||||| |||| |||||||| |||   |||||||  || ||||||||||||||    
T  10565691 aagatggaaatcatgagaatcttattccacctgcaaaggagtgcttagtttcactttttaggattggacttatgtgttcaatggagtcaccaaaagaaag 10565790  T
Q  108 aatgaacat 116  Q
    ||| |||||    
T  10565791 aatcaacat 10565799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 7193688 - 7193811
Alignment:
Q  2 caatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaa 101  Q
    |||||||||||||||| ||||  ||| | | ||||  |||| |||| ||| |||||||| |||| |||||||| ||||| ||||||   |||||||||||    
T  7193688 caatagaagatggaaacagtggaaatttcactccaaatgtagagaagtgcgtagtttcactttttaggattggacttgcttgttcagtggaatcaccaaa 7193787  T
Q  102 agaaagaatgaacatagtagatgt 125  Q
    |||||||||||| ||||| |||||    
T  7193788 agaaagaatgaatatagtggatgt 7193811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 10651699 - 10651613
Alignment:
Q  33 tccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaaagaatgaacatagt 119  Q
    |||| ||||| |||| || ||||||||| |||| |||||||| ||||| ||||||    ||||||||||||||||||||||||||||    
T  10651699 tccaactgtagagaagtgtttagtttcacttttcaggattggacttgcttgttcagtgaaatcaccaaaagaaagaatgaacatagt 10651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 10659571 - 10659480
Alignment:
Q  44 agaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagag 135  Q
    |||| |||||||||||| ||||  ||||||| ||||| ||||||    |||||||||||||||||||||| ||||| ||||| || ||||||    
T  10659571 agaagtgcttagtttcactttttcggattggacttgcatgttcagtgaaatcaccaaaagaaagaatgaatatagttgatgtcaccagagag 10659480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 140
Target Start/End: Complemental strand, 19605347 - 19605256
Alignment:
Q  49 tgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaaagaatgaacatagtagatgttactagagagctaaa 140  Q
    ||||| |||||  |||| |||||||| ||||||||||| |  ||||| || |||||||||||||| |||| |||||  ||||||||||||||    
T  19605347 tgctttgtttccatttttaggattggacttgcctgttcgatggaatctcccaaagaaagaatgaatatagaagatgccactagagagctaaa 19605256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 10716512 - 10716381
Alignment:
Q  6 agaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaa 105  Q
    |||||||||||  |  |||||||||||||| || |||||  | |||||||||||  |||| |||||||| ||||  ||| |||  |||||||| | ||||    
T  10716512 agaagatggaagcatagagaatcttattcctgcggtaaatgaatgcttagtttctcttttcaggattggacttgtttgtacaatggaatcaccgatagaa 10716413  T
Q  106 agaatgaacatagtagatgttactagagagct 137  Q
    |||||||| ||  | ||||| |||||||||||    
T  10716412 agaatgaatattatggatgtcactagagagct 10716381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12958738 - 12958874
Alignment:
Q  1 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaa 100  Q
    |||| |||||||||||||  ||||| |||||||||| ||||| || | |||||||||||| |||| |||||||| |||   ||||||   ||||||||||    
T  12958738 gcaagagaagatggaaatcatgagattcttattccaactgtagaggagtgcttagtttcactttttaggattggacttttatgttcattggaatcaccaa 12958837  T
Q  101 aagaaagaatgaacatagtagatgttactagagagct 137  Q
    ||||||||||||| || || ||||| |||||||||||    
T  12958838 aagaaagaatgaatattgtcgatgtcactagagagct 12958874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 12907852 - 12907986
Alignment:
Q  3 aatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaa 102  Q
    |||||||||||||| |  ||||| ||||||||||  |||| || | ||||||  |||| |||| |||||||| |||   ||||||   |||||| |||||    
T  12907852 aatagaagatggaattcatgagattcttattccaaatgtagaggagtgcttaacttcactttttaggattggacttttatgttcattggaatcaacaaaa 12907951  T
Q  103 gaaagaatgaacatagtagatgttactagagagct 137  Q
    ||||||||||| || |||||||| | |||||||||    
T  12907952 gaaagaatgaatattgtagatgtcaatagagagct 12907986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12900233 - 12900369
Alignment:
Q  1 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaa 100  Q
    ||||||||||||||||||  ||||| || ||||||| || || |  | |||||||||||| || | |||||||  |||   |||||    ||||||||||    
T  12900233 gcaatagaagatggaaatcatgagattcatattccaactatagaagagtgcttagtttcacttcttaggattgcacttttatgttctttggaatcaccaa 12900332  T
Q  101 aagaaagaatgaacatagtagatgttactagagagct 137  Q
    ||||||||||||| || || ||||| |||||||||||    
T  12900333 aagaaagaatgaatattgtggatgtcactagagagct 12900369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 12932939 - 12933075
Alignment:
Q  1 gcaatagaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaa 100  Q
    ||||||||||||||||||  ||||| || ||||||| || || |  ||||||| |||||| || | |||||||  |||   |||||    ||||||||||    
T  12932939 gcaatagaagatggaaatcatgagattcatattccaactatagaagattgctttgtttcacttcttaggattgcacttttatgttctttggaatcaccaa 12933038  T
Q  101 aagaaagaatgaacatagtagatgttactagagagct 137  Q
    ||||||||||||| || || ||||| |||||||||||    
T  12933039 aagaaagaatgaatattgtggatgtcactagagagct 12933075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 17922941 - 17922810
Alignment:
Q  6 agaagatggaaatagtgagaatcttattccagctgtaaagaattgcttagtttcagttttaaggattggtcttgcctgttcaagagaatcaccaaaagaa 105  Q
    |||||||||||||  ||||| |||| ||||| ||||| || | |||||||||||  |||| |||||||| |||   ||||||   |||||||||||||||    
T  17922941 agaagatggaaatcatgagattcttcttccaactgtagaggagtgcttagtttccctttttaggattggacttttttgttcattggaatcaccaaaagaa 17922842  T
Q  106 agaatgaacatagtagatgttactagagagct 137  Q
    |||||||| || || ||||| |||||||||||    
T  17922841 agaatgaatattgtggatgtcactagagagct 17922810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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