View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_27 (Length: 336)
Name: NF8172_low_27
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_27 |
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| [»] scaffold0952 (1 HSPs) |
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| [»] scaffold0717 (2 HSPs) |
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| [»] scaffold1562 (2 HSPs) |
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| [»] scaffold1158 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 20534849 - 20535164
Alignment:
| Q |
6 |
tgaaccgttaaacaattaccaattcccattgaatacggtcatctatcatactttgataccgccaccgctatatacagagctatcacggtgatatagctct |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
20534849 |
tgaaccgttaaacaattaccaattcccattgaatacggtaatctataatactttgataccgctaccgctatatacagagatatcacggtgatatagctct |
20534948 |
T |
|
| Q |
106 |
atgacgtagcggaatttgaacaaatcaatactgttccgcgatttgctatttattccacaacattgttaaggagtaagacggcaaaatgagccattattat |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
20534949 |
ataacgtagcggaatttgaacaaatcaatactgttccgcgatttgctatttattccacaacattgttaaggagtaagatggaaaaatgagccattattat |
20535048 |
T |
|
| Q |
206 |
atatccatcgtttatagatcctaaacttgaaaggaagaagcctgcttaatatggatttgttgccctaggatcaagccagtttcccctatctgcagatcga |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20535049 |
atatccatcgtttatagatcctaaacttgaaaggaagaagcctgcttaatatggatttgttgccctaggatcaagccagtttcccctatctgcagattga |
20535148 |
T |
|
| Q |
306 |
gaagtgttacaatttt |
321 |
Q |
| |
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|||||||||||||||| |
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| T |
20535149 |
gaagtgttacaatttt |
20535164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 29106182 - 29106228
Alignment:
| Q |
270 |
ctaggatcaagccagtttcccctatctgcagatcgagaagtgttaca |
316 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
29106182 |
ctaggatcaagccagttccccgtatctgcagatcgagaagtgttaca |
29106228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 29105922 - 29105967
Alignment:
| Q |
212 |
atcgtttatagatcctaaacttgaaaggaagaagcctgcttaatat |
257 |
Q |
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||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
29105922 |
atcgtttatagatcctaaacttgaatggaggaagcctgctaaatat |
29105967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 321
Target Start/End: Complemental strand, 2864 - 2550
Alignment:
| Q |
6 |
tgaaccgttaaacaattaccaattcccattgaatacggtcatctatcatactttgataccgccaccgctatatacagagctatcacggtgatatagctct |
105 |
Q |
| |
|
|||||| ||||||||||| |||||||||||| ||||||| |||||| ||||||||||||||| |||||||||| ||||| |||||||||||||||||||| |
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| T |
2864 |
tgaacccttaaacaattatcaattcccattgtatacggtaatctataatactttgataccgctaccgctatat-cagagatatcacggtgatatagctct |
2766 |
T |
|
| Q |
106 |
atgacgtagcggaatttgaacaaatcaatactgttccgcgatttgctatttattccacaacattgttaaggagtaagacggcaaaatgagccattattat |
205 |
Q |
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|| || |||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||| |||||||||||||||||| |
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| T |
2765 |
ataacatagcggaatttgaacaaatcaatattgttctgcgatttgctatttatttcaaaacattgttaaggactaagacggaaaaatgagccattattat |
2666 |
T |
|
| Q |
206 |
atatccatcgtttatagatcctaaacttgaaaggaagaagcctgcttaatatggatttgttgccctaggatcaagccagtttcccctatctgcagatcga |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2665 |
atatccatcgtttatagatcctaaacttgaaaggaagaagcctgcttaatatggatttgttgccctaggatcaagccagtttcccctgtctgcagatcga |
2566 |
T |
|
| Q |
306 |
gaagtgttacaatttt |
321 |
Q |
| |
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||| |||||||||||| |
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| T |
2565 |
gaaatgttacaatttt |
2550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 6 - 206
Target Start/End: Original strand, 2498 - 2686
Alignment:
| Q |
6 |
tgaaccgttaaacaattaccaattcccattgaatacggtcatctatcatactttgataccgccaccgctatatacagagctatcacggtgatatagctct |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | |||||||| || |||||| ||||||| |
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| T |
2498 |
tgaaccgttaaacaattaccaattcccattgaatacggtaatctataatactttgatactga------tatatacaaagatatcacaatgatata----- |
2586 |
T |
|
| Q |
106 |
atgacgtagcggaatttgaacaaatcaatactgttccgcgatttgctatttattccacaacattgttaaggagtaagacggcaaaatgagccattattat |
205 |
Q |
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| |||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||| |||| | ||||||| |||||||| |
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| T |
2587 |
-taacgtagcgaaatttgaacaaatcagtattgttccgcgatttgctatttatttcacaatattgttaaggagtaaaacggaagaatgagcaattattat |
2685 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 2699 - 2767
Alignment:
| Q |
253 |
aatatggatttgttgccctaggatcaagccagtttcccctatctgcagatcgagaagtgttacaatttt |
321 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2699 |
aatatggatatgttgccctaggatcaagccagtttcccctatctgcagatcgagaagtgttacaatttt |
2767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1562 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold1562
Description:
Target: scaffold1562; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 1221 - 1410
Alignment:
| Q |
5 |
atgaaccgttaaacaattaccaattcccattgaatacggtcatctatcatactttgataccgccaccgctatatacagagctatcacggtgatatagctc |
104 |
Q |
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|
|||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||| || |||||||| || |||||| |||||||| |
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| T |
1221 |
atgaaccgttaaacaattactaattcacattgaatacggtaatctataatactttgatactgc------tatatacaaagatatcacagtgatata---- |
1310 |
T |
|
| Q |
105 |
tatgacgtagcggaatttgaacaaatcaatactgttccgcgatttgctatttattccacaacattgttaaggagtaagacggcaaaatgagccattatta |
204 |
Q |
| |
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| || || || ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| |||||||| |
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| T |
1311 |
--taacttatcgaaatttgaacaaatcagtattgttccgcgatttgctatttatttcacaatattgttaaggagtaagacggaagaatgagtcattatta |
1408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1562; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 1423 - 1491
Alignment:
| Q |
253 |
aatatggatttgttgccctaggatcaagccagtttcccctatctgcagatcgagaagtgttacaatttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1423 |
aatatggatttgttgccctaggatcaagcctgtttcccctatctgcagatcgagaagtgttacaatttt |
1491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold1158
Description:
Target: scaffold1158; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 1372 - 1183
Alignment:
| Q |
5 |
atgaaccgttaaacaattaccaattcccattgaatacggtcatctatcatactttgataccgccaccgctatatacagagctatcacggtgatatagctc |
104 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||| |||||||||||| || |||||||| || |||||| |||||||| |
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|
| T |
1372 |
atgaaccgttaaacaattactaattcacattgaatacggtaatctataatactttgatactgc------tatatacaaagatatcacagtgatata---- |
1283 |
T |
|
| Q |
105 |
tatgacgtagcggaatttgaacaaatcaatactgttccgcgatttgctatttattccacaacattgttaaggagtaagacggcaaaatgagccattatta |
204 |
Q |
| |
|
| || || || ||||||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| |||||||| |
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|
| T |
1282 |
--taacttatcgaaatttgaacaaatcagtattgttccgcgatttgctatttatttcacaatattgttaaggagtaagacggaagaatgagtcattatta |
1185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1158; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 1170 - 1102
Alignment:
| Q |
253 |
aatatggatttgttgccctaggatcaagccagtttcccctatctgcagatcgagaagtgttacaatttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
1170 |
aatatggatttgttgccctaggatcaagcctgtttcccctatctgcagatcgagaagtgttacaatttt |
1102 |
T |
|
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