View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8172_low_28 (Length: 334)
Name: NF8172_low_28
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 38 - 317
Target Start/End: Original strand, 54805469 - 54805748
Alignment:
| Q |
38 |
ttggaagcattctgataaatttaaaacatttaacagatcaatttaaaaacacctcttgtccgtttgtcaagttcaatgccacaatgtagtaaagaataag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54805469 |
ttggaagcattctgataaatttaaaacatttaacagatcaatttaaaaacacctcttgtccgtttgtcaagttcaatgccacaatgtagtaaagaataat |
54805568 |
T |
|
| Q |
138 |
aaatgacattttataatatacccggaggttaataaaacagcatacaaattttattttaatcataaatgacaaaatatattaacagtttattttatcagca |
237 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54805569 |
aaatgacattttataatatacctggaggttaataaaacagcatataaattttattttaatcataaatgacaaaatatattaacagtttattttatcagca |
54805668 |
T |
|
| Q |
238 |
atggtttttacttagatatctcactttatcctttaaaacgaggcttaacttcagagaagcattccttcatgtgtattagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54805669 |
atggtttttacttagatatctcactttatcctttaaaacgaggcttaacttcagaggagcattccttcatgtgtattagt |
54805748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 54805419 - 54805449
Alignment:
| Q |
1 |
gaatcaaaattcagattaagttatgaactga |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
54805419 |
gaatcaaaattcagattaagttatgaactga |
54805449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University