View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_3 (Length: 713)
Name: NF8172_low_3
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 12 - 696
Target Start/End: Original strand, 38752475 - 38753158
Alignment:
| Q |
12 |
gagatgaacaaacctgttgttggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgc |
111 |
Q |
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| T |
38752475 |
gagatgaacaaacctgttgctggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgc |
38752574 |
T |
|
| Q |
112 |
agcttcacaacgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752575 |
agcttcacaacgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgt |
38752674 |
T |
|
| Q |
212 |
tcatggcaaaagtaaggtgcaaaaacacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaaccagtcatcatggccg |
311 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752675 |
tcatggcaaaagtaaggtgcaaaaatacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaaccagtcatcatggccg |
38752774 |
T |
|
| Q |
312 |
taagaatttttggttgtttctggctctcttgtgctaatcataatcatttatcaccatctttatagacnnnnnnngaattaaacaagaggaaagggaagat |
411 |
Q |
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| T |
38752775 |
taagaatttttggttgtttctggctctcttgtgctaatcataatcatttatcaccatctttatagacaaaaaaagaattaaacaagaggaaagggaagat |
38752874 |
T |
|
| Q |
412 |
tattagaacgatgaatattttaattacataaggttcccttaatggcctacatgttaattattttatttcatataaaactatatcaccaaatttttatttg |
511 |
Q |
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||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38752875 |
tattagaacgatgaata-tttaatttcataaggttcccttaatggcctacatgttaattattttatttcatataaaactatatcaccaaaattttatttg |
38752973 |
T |
|
| Q |
512 |
ttagaaaatgagattcttatttaaaaacatccttatgtgacaaaattaagagatagcattaaccaaacccattttgtttgatgattggatctagctattg |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38752974 |
ttagaaaatgagattcttatttaaaaacatccttatgtgacaaaattaagagatagcattaaccaaacccattttgtttgatgattggatctagctattg |
38753073 |
T |
|
| Q |
612 |
gctcttgtcttttctgtttctcaagaattatgtatatagggtacctcatatatgatagcggcaacgttttcaattactacttttt |
696 |
Q |
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| T |
38753074 |
gctcttgtcttttctgtttctcaagaattatgtatatagggtacctcatatatgatagccgcaacgttttcaattactacttttt |
38753158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 3e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 21 - 295
Target Start/End: Complemental strand, 30904236 - 30903962
Alignment:
| Q |
21 |
aaacctgttgttggagtgcaaaaatatgggcaacacatccataaattggatcttgaagtctagcttgagcttcataagagattgtgactgcagcttcaca |
120 |
Q |
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||||||||||||| || ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
30904236 |
aaacctgttgttgtagggcaaaaatatgtgaaacacatccataaataggatcttgaagtctagcttgagcttcataagagattgtaacagcggcttcgca |
30904137 |
T |
|
| Q |
121 |
acgatcggtcacagggaggtgtgcaagaagctttgaaacattacttgcaccaaagaccttatgaatagctgcaaaatgggtagcaccttgttcatggcaa |
220 |
Q |
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||||| | |||||||| || |||||||||||||| ||||| ||||||||||| ||||||||||| |||| |||||| ||||||||||||||||| || |
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| T |
30904136 |
gcgatcacttacagggagatgagcaagaagctttgagacattgcttgcaccaaaaaccttatgaatggctgaaaaatgtgtagcaccttgttcatgagaa |
30904037 |
T |
|
| Q |
221 |
aagtaaggtgcaaaaacacaacctctaacacattttctcctcaagaatttgcaggctccacaaggagaaccagaa |
295 |
Q |
| |
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|| ||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||||||||| |
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| T |
30904036 |
aaataaggtgcaaaaacacaacctcttatacattttcttctcaaaaatttgcaagctccacaaggagaaccagaa |
30903962 |
T |
|
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