View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_30 (Length: 324)
Name: NF8172_low_30
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 11173975 - 11174079
Alignment:
| Q |
206 |
gctcaaccaa-gattatgcaagtcgtttaccacaaaatatacaaattggcgccacattgtttgcaatattatgcaaacattcacgatattaaacatcatg |
304 |
Q |
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| T |
11173975 |
gctcaaccaaagattatgcaagtcgtttaccacaaaatatacaaattggcgccacattgtttgcaatatcatgcaaacattcatgatattaaacatcatg |
11174074 |
T |
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| Q |
305 |
caata |
309 |
Q |
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|||| |
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| T |
11174075 |
taata |
11174079 |
T |
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Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 11173764 - 11173842
Alignment:
| Q |
10 |
agagagaagaatcgtaatggttgtgattataatttgagaaaagacaagtgaagtacaattgagacgatccatttccgtc |
88 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11173764 |
agagagaagaatcgtaatggttgtgattataatttgagaaaagacaagtgaagtacaattgagacgatccatttccgtc |
11173842 |
T |
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