View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_33 (Length: 314)
Name: NF8172_low_33
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 4353217 - 4353512
Alignment:
| Q |
1 |
ctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcataacttcttcacgtgtactcacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4353217 |
ctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtcataacttcttcacgtgtgctcacg |
4353316 |
T |
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| Q |
101 |
cgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcacc |
200 |
Q |
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| T |
4353317 |
cgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtaattgtcgaagcttcccc |
4353416 |
T |
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| Q |
201 |
ggcacttcccggatttggacggactcctaaggcaaggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggt |
296 |
Q |
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| T |
4353417 |
ggcacttcccggatttggaaggactcctaaggcgcggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggt |
4353512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 4359053 - 4358758
Alignment:
| Q |
1 |
ctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcataacttcttcacgtgtactcacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4359053 |
ctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtcataacttcttcacgtgtgctcacg |
4358954 |
T |
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| Q |
101 |
cgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcgaggcttcacc |
200 |
Q |
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| T |
4358953 |
cgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtaattgtcgaagcttcccc |
4358854 |
T |
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| Q |
201 |
ggcacttcccggatttggacggactcctaaggcaaggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggt |
296 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358853 |
ggcacttcccggatttggaaggactcctaaggcgcggcagttgagggtgaccgactcaccttttccgctacacgacactgacgccgacgccgaggt |
4358758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 4349831 - 4350083
Alignment:
| Q |
1 |
ctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcata---------acttcttcacgt |
91 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| | | |||||||| || || |||||||||||| |
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| T |
4349831 |
ctctctaccacaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccaccgcaacaaccacttcttcacgt |
4349930 |
T |
|
| Q |
92 |
gtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatgaagtgattgtcga |
191 |
Q |
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|| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||| ||||| | || |
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| T |
4349931 |
gtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaaggctgtgttagagaaaatggtaaacaataatgaggtgataggtga |
4350030 |
T |
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| Q |
192 |
ggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagttga |
244 |
Q |
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|||||| |||| || ||||| | | |||| ||||||| | | |||||||||| |
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| T |
4350031 |
ggcttccccggtgctccccggttctcgacgaactcctatgaccaggcagttga |
4350083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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