View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_34 (Length: 311)

Name: NF8172_low_34
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_34
NF8172_low_34
[»] chr4 (7 HSPs)
chr4 (1-300)||(51303217-51303513)
chr4 (1-300)||(5204187-5204485)
chr4 (47-162)||(38945495-38945610)
chr4 (216-300)||(9536263-9536347)
chr4 (1-157)||(38224309-38224465)
chr4 (27-154)||(10484240-10484367)
chr4 (101-165)||(10470428-10470492)
[»] chr2 (2 HSPs)
chr2 (123-300)||(35061488-35061664)
chr2 (27-111)||(35061181-35061265)
[»] chr3 (1 HSPs)
chr3 (235-298)||(25121573-25121634)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 51303217 - 51303513
Alignment:
Q  1 cctggaatgcaactagagaagcacaaaaggaatatacctgcatcagtacgcaagactccaccaaacccggttttgattggagaaccatgacaacttccac 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||     
T  51303217 cctggaatgcaactaaagaagcacaaaaggaatatacctgcatcagcacgcaagactccaccaaacccggttttaattggagaaccaagacaacttccat 51303316  T
Q  101 ccacattaagaatagcacctgaaaaattgttatcgttccatctgatgtacctgttagttgtaacaacagaagaagaagaaggagaaaggctgattgcaat 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||| | ||||||||||||||||||||||| ||||    
T  51303317 ccacattaagaatagcacctgaaaaattgttatctttccatctgatgtacctgttagttgt---aacagcaaaagaagaaggagaaaggctgattacaat 51303413  T
Q  201 gctttcaatcaaatttttatgttacaagtcagaagatgtaaagaccaaaattcaccacccaaacacataaggttccgatatcgccaagaccaccaaactc 300  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||| ||| ||||||||| ||||||||||    
T  51303414 gctttcaatcaaatttttatgttacaagtcagacgatgtaaagaccaagattcaccacccaaacacataagattctgatgtcgccaagatcaccaaactc 51303513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 5204187 - 5204485
Alignment:
Q  1 cctggaatgcaactagagaagcacaaaaggaatatacctgcatcagtacgcaagactccaccaaacccggttttgattggagaaccatgacaacttccac 100  Q
    |||||||| |||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||     
T  5204187 cctggaatccaactagagaagcctgaaaggaatatacctgcatgagtacgcaagactccaccaaacccggttttgataggagaaccgtggcaacttccat 5204286  T
Q  101 ccacattaagaatagcacctgaaaaattgttatcgtt-ccatctgatgtacctgttagttgtaacaacagaagaagaagaaggagaaaggctgattgcaa 199  Q
    |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||| | |||||| |||||   | |||  | ||||| |||    
T  5204287 ccacattaagaatagcacctgaaaaattgttattatttccatctaatgtacctgttagttgtaaaagcagaagcagaag---gtgaatagttgattacaa 5204383  T
Q  200 tgctttcaatcaaattttt-atgttacaagtcagaagatgtaaagaccaaaattcaccacccaaacacataaggttccgatatcgccaagaccaccaaac 298  Q
    ||||||||||| ||||||| || ||||||| |||  ||||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||||||||    
T  5204384 tgctttcaatcgaatttttgatcttacaagccaggcgatgtaaagaccaagtttcaccacccaaacacataaggtttcgatgtcgccaagaccaccaaac 5204483  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 38945610 - 38945495
Alignment:
Q  47 tacgcaagactccaccaaacccggttttgattggagaaccatgacaacttccacccacattaagaatagcacctgaaaaattgttatcgttccatctgat 146  Q
    |||||||||||||||||||| ||||| | ||  |||   |||| ||||| ||| |||||||||||||||||||||||| ||| ||||  ||||||||||     
T  38945610 tacgcaagactccaccaaactcggttctaatatgagtgtcatggcaactaccatccacattaagaatagcacctgaaatattattattattccatctgac 38945511  T
Q  147 gtacctgttagttgta 162  Q
    |||| |||||| ||||    
T  38945510 gtacttgttagctgta 38945495  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 9536347 - 9536263
Alignment:
Q  216 tttatgttacaagtcagaagatgtaaagaccaaaattcaccacccaaacacataaggttccgatatcgccaagaccaccaaactc 300  Q
    ||||||||||||| |||  |||| |||||||||  ||||||||||| ||||||||| ||  ||| ||||||||||||||||||||    
T  9536347 tttatgttacaagacaggcgatgcaaagaccaagtttcaccacccatacacataagattttgatgtcgccaagaccaccaaactc 9536263  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 38224465 - 38224309
Alignment:
Q  1 cctggaatgcaactagagaagcacaaaaggaatatacctgcatcagtacgcaagactccaccaaacccggttttgattggagaaccatgacaacttccac 100  Q
    ||||||||| ||| |||||| | |  || |||||||||||  ||| | ||||||||||||||||| |  ||| | || ||||   ||||  |||| |||     
T  38224465 cctggaatgaaaccagagaaacccgcaatgaatatacctgagtcattgcgcaagactccaccaaatcaagttctaataggagtgtcatgctaactaccat 38224366  T
Q  101 ccacattaagaatagcacctgaaaaattgttatcgttccatctgatgtacctgttag 157  Q
    ||||||||||||||||||| |||| ||| ||||  ||||||||||||||||||||||    
T  38224365 ccacattaagaatagcacccgaaatattattattattccatctgatgtacctgttag 38224309  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 10484240 - 10484367
Alignment:
Q  27 aaggaatatacctgcatcagtacgcaagactccaccaaacccggttttgattggagaaccatgacaacttccacccacattaagaatagcacctgaaaaa 126  Q
    |||||||| |||||  ||| |||||||||| ||||||||| ||||| | |  |||| ||||||| | || ||| |||||||||||||| || ||| ||||    
T  10484240 aaggaataaacctgtgtcattacgcaagaccccaccaaactcggttctaacaggagtaccatgatagctaccatccacattaagaataacatctgtaaaa 10484339  T
Q  127 ttgttatcgttccatctgatgtacctgt 154  Q
    || |||| |||||||||  |||||||||    
T  10484340 ttattattgttccatctcttgtacctgt 10484367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 10470428 - 10470492
Alignment:
Q  101 ccacattaagaatagcacctgaaaaattgttatcgttccatctgatgtacctgttagttgtaaca 165  Q
    |||||||||||||| ||| || |||||| |||| |||||||||||||||||||| ||| ||||||    
T  10470428 ccacattaagaataacacttgtaaaattattattgttccatctgatgtacctgtcagtcgtaaca 10470492  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 300
Target Start/End: Original strand, 35061488 - 35061664
Alignment:
Q  123 aaaattgttatcgttccatctgatgtacctgttagttgtaacaacagaagaagaagaaggagaaaggctgattgcaatgctttcaatcaaattttta-tg 221  Q
    |||||| |||| ||||||| |||||||||||| |||  |||||  ||||| ||||| |||| ||  ||| ||| ||| ||| |||||  |||||||  ||    
T  35061488 aaaattattattgttccatttgatgtacctgtcagtcataacagtagaagcagaaggaggaaaa--gcttattacaaagctctcaatagaattttttctg 35061585  T
Q  222 ttacaagtcagaagatgtaaagaccaaaattcaccacccaaacacataaggttccgatatcgccaagaccaccaaactc 300  Q
    |||||||||    | ||||  ||||||  ||||||||||||||||||||| ||  |||  |||||||||||||||||||    
T  35061586 ttacaagtctagcgttgtagggaccaagtttcaccacccaaacacataagattttgatgccgccaagaccaccaaactc 35061664  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 35061181 - 35061265
Alignment:
Q  27 aaggaatatacctgcatcagtacgcaagactccaccaaacccggttttgattggagaaccatgacaacttccacccacattaaga 111  Q
    |||||||| |||||  ||| |||||||||| ||||||||||||||| | |  |||| ||||||||| || ||| |||| ||||||    
T  35061181 aaggaataaacctgtgtcattacgcaagaccccaccaaacccggttctaacaggagtaccatgacagctaccatccacgttaaga 35061265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 25121573 - 25121634
Alignment:
Q  235 gatgtaaagaccaaaattcaccacccaaacacataaggttccgatatcgccaagaccaccaaac 298  Q
    ||||||||||||||  |||||||| |||||||||  | |||||||  |||||||||||||||||    
T  25121573 gatgtaaagaccaagtttcaccactcaaacacat--gattccgatgacgccaagaccaccaaac 25121634  T

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