View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_35 (Length: 308)
Name: NF8172_low_35
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 74 - 291
Target Start/End: Complemental strand, 37129245 - 37129027
Alignment:
| Q |
74 |
aggtaattgagctgacaggtataagtaattgcnnnnnnnnnt-ctgatgggtagnnnnnnntgctcttatgagtaggggatgctaaaatgggttaacagg |
172 |
Q |
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| T |
37129245 |
aggtaattgagctgacaggtataagtaattgcaaaaaaaaattctgatgggtagaaaaaaatgctcttatgagtaggggatgctaaaatgggttaacagg |
37129146 |
T |
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| Q |
173 |
gaccctcttaaattagcctgaaacatagcatgaattgataaggataataaggttgttctttaggttcttaggtcgctcaaccctgnnnnnnnntgtcgat |
272 |
Q |
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| T |
37129145 |
gaccctcttaaattagcctgaaacatagcatgaattgataaggataataaggttgttctttaggttcttaggtcgctcaaccctgaaaaaaaatgtcgat |
37129046 |
T |
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| Q |
273 |
caaaaaatagtttttgatg |
291 |
Q |
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||||||||||||||||||| |
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| T |
37129045 |
caaaaaatagtttttgatg |
37129027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37129295 - 37129236
Alignment:
| Q |
1 |
aatggtatacaagcgtgtaaaatcaggaaagcaagctcaatgcctcgtataggtaattga |
60 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37129295 |
aatggtctacaagcgtgtaaaatcaggaaagcaagctcaatgcctcgtataggtaattga |
37129236 |
T |
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