View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8172_low_36 (Length: 301)
Name: NF8172_low_36
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 121 - 286
Target Start/End: Complemental strand, 20162678 - 20162513
Alignment:
| Q |
121 |
aagtgtttgctgtgttggttctggtttgaaacagaaagaaataataaaacaaggaatggtgtcctaaccgttttatatatttccttactttgatatctca |
220 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20162678 |
aagtgtttgctctgttggttctggtttgaatcagaaagaaataataaaacaaggaatggtgtcctaaccgttttatatatttccttactttgatatctca |
20162579 |
T |
|
| Q |
221 |
tacttattgattcatgtctaattgtagcattgtactaatgtattgaagcgttgcttaggtattcat |
286 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20162578 |
taattattgattcatgtctaattgtagcattgtactaatgtattgaagcgttgcttaggtattcat |
20162513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 20163103 - 20162981
Alignment:
| Q |
1 |
gttgaccctcttgacatatggtagagaaatgcatttgcattatattctactttaatggtctattatcattagttaatctgcaggaaaatggtagggcatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
20163103 |
gttgaccctcttgacatatggtagagaaatgcatttgcattatattctactttaatggtctattatcattagttagtctgcaggaaaatggtagggcata |
20163004 |
T |
|
| Q |
101 |
aattgagtctttcgcaccaaaag |
123 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
20163003 |
aattgagtctttcgcaccaaaag |
20162981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University