View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_38 (Length: 285)
Name: NF8172_low_38
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_38 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: scaffold0013 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 6 - 265
Target Start/End: Original strand, 88106 - 88363
Alignment:
| Q |
6 |
agatgtcaagccccataaagaagaagacactcagtagggaaaacacccattcatacactccattgaaattaacactgaatcatccttcacaaatcattgc |
105 |
Q |
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| T |
88106 |
agatgtcaagcccgagaaagaagaagacactcaatagggaaaacacccattcatacactccattgaaattaacactgaatcatccttctcaaatcattgc |
88205 |
T |
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| Q |
106 |
cattaaaataatatattacaaatcaaagaccaatgttacatttgaggtatggtacacaaaccttaatacacacataagctaaatgccaccatacaaagta |
205 |
Q |
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| T |
88206 |
cattaaaataatatattacaaatcaaagaccaatgttacatttgaggtatggtacacaaaccttaatacacacataagctaaatgccaccatacaaagta |
88305 |
T |
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| Q |
206 |
tggtgtgacatttgtgtttactaaatggcaccatacttagtacatgcataagctaacatg |
265 |
Q |
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| T |
88306 |
tg--gtgacatttgtgtttactaaatgtcaccatacttggtacatgcataagctaacatg |
88363 |
T |
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