View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_4 (Length: 671)
Name: NF8172_low_4
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 22882506 - 22882194
Alignment:
| Q |
17 |
acttaactatccatttgggaggagttgattggatttaaagtaattagcacacaaatcttgatcttgatggatagtgaagtgaatataataacaatccttc |
116 |
Q |
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| T |
22882506 |
acttaactatccatttgggaggagttgattggatttaaagtaattagcacacaaatcttgat------ggatagtgaagtgaatataataacaatccttc |
22882413 |
T |
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| Q |
117 |
agattcagacagaatcaactaagtagaatgaaatggcattcttcattcctctgttcaggaccatcagagactcttaattgctgtgctaactttgaggatc |
216 |
Q |
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| T |
22882412 |
agattcagacagaatcaactaagtagaatgaaatggcattcttcattcctctgttcaggaccatcagagactcttaattgctgtgctaactttgaggatc |
22882313 |
T |
|
| Q |
217 |
gcgtctattcctaattgttgtcactcatccttatggaatcggatagtattttcatgctctcatggctctaggagtagcacttttgctgccttgaatgcct |
316 |
Q |
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| T |
22882312 |
gcgtctattactaattgttgtcactcatccttatggaatcggatagtattttcatgctctcatggctctaggagtagcacttttgctgccttgaatgcct |
22882213 |
T |
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| Q |
317 |
tctattctcttggttaatt |
335 |
Q |
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| T |
22882212 |
tctattctcttggttaatt |
22882194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 332 - 654
Target Start/End: Complemental strand, 22882130 - 22881808
Alignment:
| Q |
332 |
aattgatctgactagttagttacgtccgctatcgcaacaaagtgtggtataacagtccttaggcgttgtccaagaacctggaacattgctaaaaatctga |
431 |
Q |
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| T |
22882130 |
aattgatctgactagttagttacgtccgctatcgcaacaaagtgtggtataacagtccttaggcgttgtgcaagaacctgtaacattgctaacaatctga |
22882031 |
T |
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| Q |
432 |
taactactgtagtggcaacattgaaaacccgatttacccacaattgatagctgtgc--tannnnnnnnggggacttttgaaataggtttgtgcatctgct |
529 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
22882030 |
taactactgtagtggcaacattgaaaacccgatttacccacaattgatagctgtgctttttttttttgggggacttttgaaataggtttgtgcatctgct |
22881931 |
T |
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| Q |
530 |
ctatactcacttgttttcgtaagtaaaacggcaaaacgcaggcgtctgctcgtcactcttcattatattttcgacaaccccatttatgtaatttgtagat |
629 |
Q |
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| T |
22881930 |
ctatactcacttgttttcgtaagtaaaacggcaaaacgcaggcgtctgctcgtcactctttattatattttcgacaa--ccatttatgcaatttgtagat |
22881833 |
T |
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| Q |
630 |
accttcattttacagttttgtgcgc |
654 |
Q |
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| T |
22881832 |
accttcattttacagttttgtgcgc |
22881808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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