View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_40 (Length: 273)
Name: NF8172_low_40
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 258
Target Start/End: Original strand, 9877245 - 9877485
Alignment:
| Q |
18 |
tatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgtttcttccaccagtagt |
117 |
Q |
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| T |
9877245 |
tatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgtttcttccaccagtagt |
9877344 |
T |
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| Q |
118 |
tttcttcacattatcgtcataattactactcgtaagaagatgaccgaaaatcaactccggaacataaaccttctcttcttgatgaatctcaaccggaaca |
217 |
Q |
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| T |
9877345 |
tttcttcacattatcgtcataattactactcgtaagaagatgaccaaaaatcaactccggaacataaaccttctcttcttgatgaatctcaaccggaaca |
9877444 |
T |
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| Q |
218 |
ccgtcaccgttattgtaaacagaaaccgtattcgccacagg |
258 |
Q |
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| T |
9877445 |
ccgtcaccgttattgtaaacagaaaccgtattcgcctcagg |
9877485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 131
Target Start/End: Original strand, 38841176 - 38841289
Alignment:
| Q |
18 |
tatacttcttcaacctccgtccatcagcagtttcaataacaaactcagtcgagaaaatattcgtgagcttagcaccataaccgtttcttccaccagtagt |
117 |
Q |
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||||||||||||| | ||||||||| || | |||||||||||||| |||| |||||||| |||||||||||||||||||| ||||| ||||||||||| |
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| T |
38841176 |
tatacttcttcaaacgacgtccatcaacaatctcaataacaaactccttcgaaaaaatattggtgagcttagcaccataaccatttctcccaccagtagt |
38841275 |
T |
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| Q |
118 |
tttcttcacattat |
131 |
Q |
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| T |
38841276 |
tttcttcacattat |
38841289 |
T |
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