View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_42 (Length: 272)
Name: NF8172_low_42
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 47645882 - 47645631
Alignment:
| Q |
17 |
actatacatgtacacgatcatttctcatcaaatgtagctaaagaaatattgctcaaaccaagttgagcatgagaattaattctactaatctcaccaatta |
116 |
Q |
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| T |
47645882 |
actatacatgtccacgatcatttctcatcaaatgtagctaaagaaatattgctcaaaccaagttgagcatgagaattaattctactaatctcaccaatta |
47645783 |
T |
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| Q |
117 |
tttcatcaagtgcaactttatctttcaatattgaagtatgagtcaccccaccaatcttaataactttcaagtactgannnnnnncatctttccatagaga |
216 |
Q |
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| T |
47645782 |
tttcatcaagtgcaactttatctttcaatattgaagtatgagtcaccccaccaatcttaataactttcaagtactgatttttttcatctttccatagaga |
47645683 |
T |
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| Q |
217 |
ttcaattgccaacaagctcactatgttcacagttccgtcaccaccaccatac |
268 |
Q |
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| T |
47645682 |
ttcaagtgccaacaagctcaccatgttcacagttccgtcaccatcaccatac |
47645631 |
T |
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