View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8172_low_45 (Length: 256)
Name: NF8172_low_45
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 48096986 - 48096753
Alignment:
| Q |
1 |
atttgctccctaagcaaacatgaatatttttgcgatgaacaaatcaactccttatgagtctattgctctataagagatgtgttttcatgagtctttacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48096986 |
atttgctccctaagcaaacatgaatatttttgcgatgaacaaatcaactccttatgagtctattgctctttaagagatgtgttttcatgagtctttacga |
48096887 |
T |
|
| Q |
101 |
attaataaaattgttaaggtcgatactttatctatatctatatactatacatttaagtcttgtttcataaacctatttaaatgtatactctcaccatatt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48096886 |
atcaataaaattgttaaggtcgatactttatctatatctatatactatacatttaagtcttgtttcataaacctatttaaatgtatactctcaccatatt |
48096787 |
T |
|
| Q |
201 |
atgcgtgtgtgggtgcgcgcgtgcgtgtgtgtta |
234 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |
|
|
| T |
48096786 |
atgtatgtgtgggtgcgcgcgtgcgtgtgtgtta |
48096753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 48099121 - 48098897
Alignment:
| Q |
1 |
atttgctccctaagcaaacatgaatatttttgcgatgaacaaatcaactccttatgagtctattgctctataagagatgtgttttcatgagtctttacga |
100 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||| | |||||||||||||| |||||| || |
|
|
| T |
48099121 |
atttgctccctga-caaacatgaat-tttttgcgatgaacgaatcaactacttatgagtctattgctctttaaaaaatgtgttttcatga-tctttatga |
48099025 |
T |
|
| Q |
101 |
attaataaaattgttaaggtcgatactttatctatatctatatactatacatttaagtcttgtttcataaacctatttaaatgtatactctcaccatatt |
200 |
Q |
| |
|
|| |||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| | | |||||||| |||||||||| |||| |
|
|
| T |
48099024 |
atcaataaaattgttaaggcttatactt------tatctatatactatacattcaagtcttgtttcataagtcaaattaaatgtttactctcaccgtatt |
48098931 |
T |
|
| Q |
201 |
atgcgtgtgtgggtgcgcgcgtgcgtgtgtgtta |
234 |
Q |
| |
|
||||||||| | ||||||||| |||||| ||||| |
|
|
| T |
48098930 |
atgcgtgtgggtgtgcgcgcgcgcgtgtatgtta |
48098897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 48095702 - 48095536
Alignment:
| Q |
46 |
aactccttatgagtctattgctctataagagatgtgttttcatgagtctttacgaattaataaaattgttaaggtcgatactttatctatatctatatac |
145 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||||||||||| ||||||| | |||| |||||||||||||| || |||| ||||||| ||||| |
|
|
| T |
48095702 |
aactcctcatgagtctaatgttctttaagagatgtgttttcgtgagtctcttggaatcaataaaattgttaacgttgataatttatct------atataa |
48095609 |
T |
|
| Q |
146 |
tatacatttaagtcttgtttcataaacctatttaaatgtatactctcaccatattatgcgtgtgtgggtgcgc |
218 |
Q |
| |
|
||||||||| |||||| |||||||| ||| |||||||| | || || |||||||| ||||||||||||| |
|
|
| T |
48095608 |
tatacatttgagtcttatttcataagtctaattaaatgtttgctttcgttatattatgtatgtgtgggtgcgc |
48095536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19900419 - 19900479
Alignment:
| Q |
1 |
atttgctccctaagcaaacatgaatatttttgcgatgaacaaatcaactccttatgagtct |
61 |
Q |
| |
|
|||||||||||||| |||| ||||| || ||||||| || ||||||||||| |||||||| |
|
|
| T |
19900419 |
atttgctccctaagaaaacgtgaatcttcctgcgatgcacgaatcaactcctcatgagtct |
19900479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University