View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_47 (Length: 255)
Name: NF8172_low_47
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7755428 - 7755665
Alignment:
| Q |
1 |
agtcattttccttataattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttcca |
100 |
Q |
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| T |
7755428 |
agtcattttccttataattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttcca |
7755527 |
T |
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| Q |
101 |
tgctttcaccttctccgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatc |
200 |
Q |
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| T |
7755528 |
tgctttcaccttctccgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatc |
7755627 |
T |
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| Q |
201 |
ttataaaatataacgaaaaccgattttccattattttcat |
240 |
Q |
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| T |
7755628 |
-tat-aaatataacgaaaaccgattttccattattttcat |
7755665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 7762894 - 7763109
Alignment:
| Q |
14 |
ataattagttaaatgtttggggacttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttc |
113 |
Q |
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| T |
7762894 |
ataattaattaatggtttgagaacttacatattatctttgcaatgtaatccactgagagcacaaacacgattcaaagccaacctccatgctttcaccttc |
7762993 |
T |
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| Q |
114 |
tccgattcccttccaaatctcttttcatgtttcctaatagcatcttcataactatttttctga-tacctaacatcgctaggttccatcttataaaatata |
212 |
Q |
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| T |
7762994 |
tccgattcctttccaaatctattttcatgtttcatcattgcaatttcataactattcctctgactacctaacatctgaaggttctatcttataaaaaata |
7763093 |
T |
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| Q |
213 |
acgaaaaccgattttc |
228 |
Q |
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| T |
7763094 |
acaaatactgattttc |
7763109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 220
Target Start/End: Original strand, 7839585 - 7839769
Alignment:
| Q |
36 |
acttacacatcgtccttgcaatgtaatccactgagagcacaaactcgattcaaagccaacttccatgctttcaccttctccgattcccttccaaatctct |
135 |
Q |
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||||||| |||||||||| | | || |||||| ||||||||||||| |||||||| || ||||| |||||||||||||||||| |||||||||||| |
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| T |
7839585 |
acttacatatcgtccttgtagtatagtccactaagagcacaaactcttttcaaagcagacctccatttcttcaccttctccgattcctttccaaatctct |
7839684 |
T |
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| Q |
136 |
tttcatgtttcctaatagcatcttcataactatttttctgatacctaacatcgctaggttccatcttataaaatataacgaaaac |
220 |
Q |
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| T |
7839685 |
tttcatgttgaatcattgcaatttcatagctctttctctgatgtctaacatcagaagcttccaccttataaaatataacaaaaac |
7839769 |
T |
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