View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_49 (Length: 253)

Name: NF8172_low_49
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_49
NF8172_low_49
[»] chr4 (9 HSPs)
chr4 (10-233)||(35106972-35107196)
chr4 (10-216)||(35072682-35072888)
chr4 (12-216)||(35097796-35098000)
chr4 (12-216)||(35098085-35098289)
chr4 (20-215)||(36940478-36940673)
chr4 (12-163)||(36296508-36296659)
chr4 (20-175)||(36961351-36961507)
chr4 (102-217)||(36935858-36935974)
chr4 (91-139)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (10-218)||(24040736-24040944)
chr6 (12-216)||(24014181-24014385)
[»] chr5 (1 HSPs)
chr5 (81-175)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 35106972 - 35107196
Alignment:
Q  10 gtgagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 109  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106972 gtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 35107071  T
Q  110 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatc 209  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35107072 gaaaatggatcaagtgaaagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatc 35107171  T
Q  210 tctggtt-aactcagaacaagcttt 233  Q
    ||||||| |||||||||||||||||    
T  35107172 tctggttaaactcagaacaagcttt 35107196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 10 - 216
Target Start/End: Complemental strand, 35072888 - 35072682
Alignment:
Q  10 gtgagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 109  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35072888 gtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgc 35072789  T
Q  110 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| ||||||    
T  35072788 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatc 35072689  T
Q  210 tctggtt 216  Q
    |||||||    
T  35072688 tctggtt 35072682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 35097796 - 35098000
Alignment:
Q  12 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 111  Q
    |||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  35097796 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 35097895  T
Q  112 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctc 211  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  |||||||||||||    
T  35097896 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctc 35097995  T
Q  212 tggtt 216  Q
    |||||    
T  35097996 tggtt 35098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 12 - 216
Target Start/End: Original strand, 35098085 - 35098289
Alignment:
Q  12 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 111  Q
    |||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||    
T  35098085 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcga 35098184  T
Q  112 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctc 211  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  |||||||||||||    
T  35098185 aaatggaccaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctc 35098284  T
Q  212 tggtt 216  Q
    |||||    
T  35098285 tggtt 35098289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 36940673 - 36940478
Alignment:
Q  20 cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat 119  Q
    |||||| |||||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||    
T  36940673 cgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggat 36940574  T
Q  120 caagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt 215  Q
    ||| ||||||||||||||||||||||  |||||||||||||||| |||||  ||||||||||||| | |||| | ||| ||||||| |||||||||    
T  36940573 caaatgaaagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt 36940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 36296659 - 36296508
Alignment:
Q  12 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 111  Q
    |||| ||||||||| |||||||| |||||  | ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| |    
T  36296659 gagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgcca 36296560  T
Q  112 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgt 163  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36296559 agatggatcaggtgaaagctgcaatggagaatggtgttctcactgtaactgt 36296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 36961351 - 36961507
Alignment:
Q  20 cgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggat 119  Q
    |||||| ||||||||||||||  || |||||||| | ||||||| ||||||||| ||||||||||||| |||||||||  |||||||||| || ||||||    
T  36961351 cgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggat 36961450  T
Q  120 caagtgaaagc-tgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 175  Q
    || ||||| ||   ||  ||||||||||||||||||||| ||| | |||||||||||    
T  36961451 caggtgaatgcaaacatgggagaatggtgttctcactgtaactattcctaaggaaga 36961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
Q  102 gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc 200  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || ||  | |||||| | |||||||||||| | ||  ||    
T  36935974 gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc 36935875  T
Q  201 attgaaatctctggtta 217  Q
    ||||| |||||||||||    
T  36935874 attgatatctctggtta 36935858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 36953768 - 36953720
Alignment:
Q  91 ttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatgga 139  Q
    ||||||| || || ||||| |||| ||||||||||||||||||||||||    
T  36953768 ttagattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 24040944 - 24040736
Alignment:
Q  10 gtgagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040944 gtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgc 24040845  T
Q  110 gaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatc 209  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| || | ||  ||||||| |||    
T  24040844 gaaaatggatcaagtgaaagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatc 24040745  T
Q  210 tctggttaa 218  Q
    |||||||||    
T  24040744 tctggttaa 24040736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 24014385 - 24014181
Alignment:
Q  12 gagaagaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcga 111  Q
    |||| ||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| || || || || || |||||||    
T  24014385 gagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcga 24014286  T
Q  112 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| ||||||||    
T  24014285 aaatggatcaagtgaaagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctc 24014186  T
Q  212 tggtt 216  Q
    |||||    
T  24014185 tggtt 24014181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 34919141 - 34919235
Alignment:
Q  81 atgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 175  Q
    |||||||||||||| || || |||||||  ||||||||||| || |||||||  ||||||||||| ||||| ||||| ||||| |||||||||||    
T  34919141 atgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga 34919235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University