View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_50 (Length: 252)

Name: NF8172_low_50
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_50
NF8172_low_50
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-241)||(775-1015)
scaffold0341 (1-241)||(8428-8668)
[»] chr1 (9 HSPs)
chr1 (1-241)||(6506750-6506990)
chr1 (1-113)||(6517056-6517168)
chr1 (2-241)||(6521745-6521978)
chr1 (154-239)||(47778065-47778150)
chr1 (5-113)||(6512661-6512769)
chr1 (166-238)||(6517215-6517287)
chr1 (178-241)||(6523747-6523810)
chr1 (178-241)||(47781971-47782034)
chr1 (154-241)||(47788185-47788272)
[»] chr7 (1 HSPs)
chr7 (202-241)||(722266-722305)


Alignment Details
Target: scaffold0341 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 775 - 1015
Alignment:
Q  1 tttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  775 tttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttat 874  T
Q  101 caaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  875 caaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacg 974  T
Q  201 caacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  975 caacatgcatttttcatcgtcgtaccatccaattgcttctt 1015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 8428 - 8668
Alignment:
Q  1 tttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8428 tttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttat 8527  T
Q  101 caaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8528 caaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacg 8627  T
Q  201 caacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  8628 caacatgcatttttcatcgtcgtaccatccaattgcttctt 8668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6506750 - 6506990
Alignment:
Q  1 tttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6506750 tttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagctaaattttttaaattatacaacaaatttttcagccctttat 6506849  T
Q  101 caaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6506850 caaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattaaacggtgtgaggaacg 6506949  T
Q  201 caacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6506950 caacatgcatttttcatcgtcgtaccatccaattgcttctt 6506990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6517056 - 6517168
Alignment:
Q  1 tttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttat 100  Q
    |||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||||||||||| || ||||||    
T  6517056 tttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatccaacaaatttttccgcactttat 6517155  T
Q  101 caaattcatcttc 113  Q
    |||||||||||||    
T  6517156 caaattcatcttc 6517168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 6521978 - 6521745
Alignment:
Q  2 ttggaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatc 101  Q
    ||||||||| | ||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||| ||| |||   |||| | |||| |     
T  6521978 ttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgtt 6521879  T
Q  102 aaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgc 201  Q
    ||| |||      || || ||||||||||| |    ||||||  |||     |||||||| ||||| |||| ||||||||||||||||| |||| |||||    
T  6521878 aaactca------acctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgc 6521785  T
Q  202 aacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  6521784 aacatgcattcttcatcgttgtaccatccaattgcttctt 6521745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 47778150 - 47778065
Alignment:
Q  154 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttc 239  Q
    |||||||| ||||||||||  | |||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||    
T  47778150 gcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 6512661 - 6512769
Alignment:
Q  5 gaccaatcacatcatttcctacagcatatttaaggtcactttcccccgatgcagctatattttttaaattatacaacaaatttttcagccctttatcaaa 104  Q
    |||||| | ||||| |||| |||||||||||||||||||| || || |||| |||| ||||| ||||||||| ||| |||||||||||  ||||||||||    
T  6512661 gaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatccaataaatttttcagtactttatcaaa 6512760  T
Q  105 ttcatcttc 113  Q
    |||||||||    
T  6512761 ttcatcttc 6512769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 6517215 - 6517287
Alignment:
Q  166 tcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgctt 238  Q
    |||| || ||||||||||||||||  |||| |||||||||||||| | ||||| |||||||| ||||||||||    
T  6517215 tcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 6523810 - 6523747
Alignment:
Q  178 aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    ||||| ||||||| |||  |||||||||||||||||||||| || ||||| |||||||||||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctt 6523747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 241
Target Start/End: Complemental strand, 47782034 - 47781971
Alignment:
Q  178 aatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    ||||| ||||||| |||  |||| ||||||||||| ||||| ||||||||||||||||||||||    
T  47782034 aatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctt 47781971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 47788272 - 47788185
Alignment:
Q  154 gcaggtcccatttcattgataccaaatattgaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    |||||||| ||||| || | ||| | ||||||||||| |||  |||| ||||| ||||| ||||| ||||||||||||||||||||||    
T  47788272 gcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctt 47788185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 722305 - 722266
Alignment:
Q  202 aacatgcatttttcatcgtcgtaccatccaattgcttctt 241  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttctt 722266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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