View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_52 (Length: 249)

Name: NF8172_low_52
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_52
NF8172_low_52
[»] chr2 (13 HSPs)
chr2 (1-249)||(9321557-9321805)
chr2 (5-109)||(10372588-10372692)
chr2 (6-108)||(9292638-9292737)
chr2 (154-249)||(10353702-10353797)
chr2 (154-249)||(9357761-9357856)
chr2 (84-249)||(9329180-9329339)
chr2 (154-249)||(10348363-10348458)
chr2 (150-249)||(9316609-9316708)
chr2 (148-200)||(7115100-7115152)
chr2 (13-85)||(9060448-9060517)
chr2 (147-249)||(10372442-10372544)
chr2 (94-189)||(9283590-9283679)
chr2 (154-187)||(8572959-8572992)
[»] chr3 (1 HSPs)
chr3 (147-249)||(37463079-37463181)
[»] chr4 (1 HSPs)
chr4 (154-249)||(26575454-26575549)
[»] scaffold0667 (1 HSPs)
scaffold0667 (153-249)||(5058-5154)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 9321805 - 9321557
Alignment:
Q  1 tcagtcgatccttaatcattcaacgcaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccaatcaacca 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9321805 tcagtcgatccttaatcattcaacacaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccactcaacca 9321706  T
Q  101 tcctttcaccaccaacatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaa 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321705 tcctttcaccaccaaaatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaa 9321606  T
Q  201 ctggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321605 ctggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 9321557  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 10372692 - 10372588
Alignment:
Q  5 tcgatccttaatcattcaacgcaaattcgatctctaccaactccaaatcgat---gatcatgatgatttctctaaatccatgatgattccaatcaaccat 101  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||   || ||||||| ||||||||    
T  10372692 tcgatccttaatccttcaacgcaaattcgatctctaccaactccaaatcgatgacgatgatgatgatttctctaaatc---gaggattccactcaaccat 10372596  T
Q  102 cctttcac 109  Q
    ||||||||    
T  10372595 cctttcac 10372588  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 9292737 - 9292638
Alignment:
Q  6 cgatccttaatcattcaacgcaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgatgattccaatcaaccatcctt 105  Q
    |||||||||||| ||| || |||||||||||||||||||||||||||||||||| ||||||||||||| || ||   ||| |||||| ||||||||||||    
T  9292737 cgatccttaatccttcgacacaaattcgatctctaccaactccaaatcgatgatgatgatgatttctccaagtc---gattattccactcaaccatcctt 9292641  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 10353797 - 10353702
Alignment:
Q  154 ctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    ||||||||||||| |||||||||||||||||||| |||||||||  | | |||||||  |||||||||  |||||||||||||||||| |||||||    
T  10353797 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatagctttcacgcatcctaacgcccccaacgaaatcacaatatggaacc 10353702  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 9357856 - 9357761
Alignment:
Q  154 ctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    ||||||||||||| |||||||||||||||||||||||| | ||| || | |||||||  |||||||||  | ||||||||||| ||||||||||||    
T  9357856 ctcttatcggttcatgtaacggcctcctcgccatctccaatggcgaaatcgctttcaggcatcctaacgccgccaacgaaatctcaatctggaacc 9357761  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 9329339 - 9329180
Alignment:
Q  84 atgattccaatcaaccatcctttcaccaccaacatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcg 183  Q
    ||||||||| ||||||||||||||| |||||||||  |||||||||| |||||      ||| | ||||| |||||||||||| || ||||||||| | |    
T  9329339 atgattccactcaaccatcctttcagcaccaacattgctcctgtcacgcgtaa------cagcaacatgggtcttatcggttcatgcaacggcctcattg 9329246  T
Q  184 ccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    | |||||| | |||||| | ||||| |   | ||||||  ||||||||||||||||||||||||||    
T  9329245 ctatctcctatggccaaatcgcttttagggaccctaacggccccaacgaaatcacaatctggaacc 9329180  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 10348458 - 10348363
Alignment:
Q  154 ctcttatcggttcctgtaacggcctcctcgccatctcc-cacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    ||||||||||||| |||||||||||||||||||||||| || ||  || | | |||||  ||||||||||||| |||||||||||||||||||||||    
T  10348458 ctcttatcggttcatgtaacggcctcctcgccatctccacaggggtaa-tcgttttcacgcatcctaacaacctcaacgaaatcacaatctggaacc 10348363  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 9316708 - 9316609
Alignment:
Q  150 atggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    ||||||||| ||||||| ||||||||||| |||||||| ||| | || ||| | |||||||  |||||| ||  | ||||||||||||||||||||||||    
T  9316708 atggctcttctcggttcatgtaacggccttctcgccatttccaatggtcaaatcgctttcatgcatccttacggcgccaacgaaatcacaatctggaacc 9316609  T

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Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 7115100 - 7115152
Alignment:
Q  148 ccatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaa 200  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | ||||||    
T  7115100 ccatggatcttatcggttcatgtaacggcctcctcgccatctccaatggccaa 7115152  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 9060448 - 9060517
Alignment:
Q  13 taatcattcaacgcaaattcgatctctaccaactccaaatcgatgatcatgatgatttctctaaatccatgat 85  Q
    ||||| ||| || ||||| ||||||||||||||||||| ||||||   ||||||||||||||||||| |||||    
T  9060448 taatccttcgacacaaatccgatctctaccaactccaagtcgatg---atgatgatttctctaaatcaatgat 9060517  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 10372544 - 10372442
Alignment:
Q  147 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 246  Q
    |||||| ||| ||||||||| |||||||||||||||||||||| | ||||| || | ||||||| | | |||    ||||||| ||||||||| ||||||    
T  10372544 accatgactcgtatcggttcatgtaacggcctcctcgccatctgcaacggcaaattcgctttcattaacccttgtgaccccaatgaaatcacattctgga 10372445  T
Q  247 acc 249  Q
    |||    
T  10372444 acc 10372442  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 9283590 - 9283679
Alignment:
Q  94 tcaaccatcctttcaccaccaacatcactcctgtcacacgtaatagaaccagaaccatggctcttatcggttcctgtaacggcctcctcgccatct 189  Q
    ||||||||||||||||||||||||||  |||| |||| | |||      ||| | || ||||||||| ||||| ||||||||||||||||||||||    
T  9283590 tcaaccatcctttcaccaccaacatcgatcctttcacgcttaa------cagcatcaaggctcttattggttcatgtaacggcctcctcgccatct 9283679  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 187
Target Start/End: Original strand, 8572959 - 8572992
Alignment:
Q  154 ctcttatcggttcctgtaacggcctcctcgccat 187  Q
    ||||||||||||| ||||||||||||||||||||    
T  8572959 ctcttatcggttcatgtaacggcctcctcgccat 8572992  T

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Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 37463181 - 37463079
Alignment:
Q  147 accatggctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctgga 246  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| | |||||| | |||||||  |||||||||  | |||||||||||||||||||||    
T  37463181 accatggctcttatcggttcatgtaacggcctcctcgctatctccaatggccaaatcgctttcacgcatcctaacgccgccaacgaaatcacaatctgga 37463082  T
Q  247 acc 249  Q
    |||    
T  37463081 acc 37463079  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 249
Target Start/End: Complemental strand, 26575549 - 26575454
Alignment:
Q  154 ctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    ||||||||||||| |||||||||||||||||||| |||||||||  | |||||||||  ||||| |||  ||||||||||||| ||||||||||||    
T  26575549 ctcttatcggttcatgtaacggcctcctcgccatgtcccacggcgtaatggctttcacgcatcccaacgcccccaacgaaatcgcaatctggaacc 26575454  T

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Target: scaffold0667 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 5154 - 5058
Alignment:
Q  153 gctcttatcggttcctgtaacggcctcctcgccatctcccacggccaactggctttcaatcatcctaacaaccccaacgaaatcacaatctggaacc 249  Q
    |||||||||||||| |||||||||||||||||| | ||| ||||| || | ||| |||  |||||||||  | ||||||||||||||||||||||||    
T  5154 gctcttatcggttcatgtaacggcctcctcgccgtttccaacggcgaaatcgctctcagacatcctaacgccgccaacgaaatcacaatctggaacc 5058  T

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