View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_55 (Length: 238)
Name: NF8172_low_55
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 224
Target Start/End: Complemental strand, 29399047 - 29398834
Alignment:
| Q |
11 |
tgagatgaagggaaagaagaacaaaactgagtgatgaggtctgattcagctaaagagattgttggttttggtgtgatgagagtgattttgcagccataac |
110 |
Q |
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| T |
29399047 |
tgagatgaggggaaagaagaacaaaactgagtgatgaggtctgattcagctaaagagattgttggttttggtgtgatgagagtgattttgcagccataac |
29398948 |
T |
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| Q |
111 |
gaagaaataactcagctgttcttagacatggattgagatgacctagaccagaacttggaaggaaagctacatgagcaacaaaggattcatctgaagaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29398947 |
gaagaaataactcagctgttcttagacatggattgagatgacctagaccagaacttggaaggaaagctacatgagcaacaaaggattcatctgaagaaga |
29398848 |
T |
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| Q |
211 |
cattgttagttttg |
224 |
Q |
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|||||||||||||| |
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| T |
29398847 |
cattgttagttttg |
29398834 |
T |
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