View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8172_low_56 (Length: 238)
Name: NF8172_low_56
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_56 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6351047 - 6350824
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6351047 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
6350948 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6350947 |
ctcactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
6350848 |
T |
|
| Q |
201 |
gccgaggcattcctaatagtatct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6350847 |
gccgaggcattcctaatagtatct |
6350824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6287509 - 6287286
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| ||||||||||||| | ||| |
|
|
| T |
6287509 |
ccttggacagagaattgaaggtgataattggacttctgattcacaaccaaaagaggctttcaagaggtttggaaagaagctggctgaaattgagaaaaaa |
6287410 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| |||||||||||||| ||||||||| |||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
6287409 |
ctcactcaaaggaacaacgatgagacactgaggaatcgttatggaccagtgaagatgccatatactttgctttatccttctagtgaggaaggattgactt |
6287310 |
T |
|
| Q |
201 |
gccgaggcattcctaatagtatct |
224 |
Q |
| |
|
|| |||||||||| |||||||||| |
|
|
| T |
6287309 |
gcagaggcattcccaatagtatct |
6287286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6361932 - 6361720
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||| || ||| |
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|
| T |
6361932 |
ccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaagagtcctttaagaggtttggaaagaagttggctgaaattgagcaaaaa |
6361833 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| | |||||||||||||||||||||| |||| ||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6361832 |
ctcattcaaaggaacaatgatgagacactgaggaatcgtaacggaccagtgaagatgccttacactctgctttatccttctagtgaggaaggattgactt |
6361733 |
T |
|
| Q |
201 |
gccgaggcattcc |
213 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
6361732 |
gcagaggcattcc |
6361720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6273258 - 6273035
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
||||||| | |||||||||||||| ||||||||| |||||||||||| ||| || |||||||| || |||| |||||||||||||||||||| ||| |
|
|
| T |
6273258 |
ccttggacagagaattgaaggtgatctttggacttctgattcacaaccattagaggctttcaagagattcggaacaaagttggctgaaattgaacaaaaa |
6273159 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||| | || ||||| || ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
6273158 |
ctcactcaaaggaacaatgatgagactctaaggaatcgatatggaccagtgaagatgccgtatactttgctttatccttctagtgaggaaggattgactt |
6273059 |
T |
|
| Q |
201 |
gccgaggcattcctaatagtatct |
224 |
Q |
| |
|
|| ||||||||||||| ||||||| |
|
|
| T |
6273058 |
gcagaggcattcctaacagtatct |
6273035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 224
Target Start/End: Complemental strand, 6330572 - 6330376
Alignment:
| Q |
28 |
ttggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaactaactcaaaggaacaatgatgagaca |
127 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |||||||||||||||| |||||||||||||||||| || || | | ||||||||||||||||| || |
|
|
| T |
6330572 |
ttggacttcagattcacagccattagaagctttcaagaggtttggaaggaagttggctgaaattgaggtaaagctcattgaaaggaacaatgatgagtca |
6330473 |
T |
|
| Q |
128 |
ttgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgacttgccgaggcattcctaatagtatct |
224 |
Q |
| |
|
|||||||| || ||||| || ||||| |||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6330472 |
ttgagaaaccgatacgggcctgtgaatatgccatacactctgctttatccttctagtgagaaaggattgacttgcagaggcattcctaatagtatct |
6330376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7457788 - 7457576
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||||||||||||| | |||| ||||| |||||||||||||||||||||||| || | || |
|
|
| T |
7457788 |
ccttggagagagaattgaaggtgatctctggacttctgattcacaaccaaaacaggcctacaagaagtttggaaagaagttggctgaaatcgagaaaaac |
7457689 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| | |||||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
7457688 |
ctcattcaaaggaacaatgatgagacactgaggaatcgaaatggacctgtgaagatgccatatacactgctttatcctactagtgaggaaggattgactt |
7457589 |
T |
|
| Q |
201 |
gccgaggcattcc |
213 |
Q |
| |
|
| |||||||||| |
|
|
| T |
7457588 |
ccagaggcattcc |
7457576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6320137 - 6319914
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
||||||| | |||| ||||||||| |||||||| |||||||| ||| |||||| |||||||||||||||| |||||||||||||||||| || |
|
|
| T |
6320137 |
ccttggacagagaaatgaaggtgaggcttggacttttgattcacagccattagaagctttcaagaggtttggaaggaagttggctgaaattgaggcaaag |
6320038 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| | ||||||||||||||||| |||||||||| || ||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6320037 |
ctcatcaaaaggaacaatgatgagtcattgagaaaccgatacgggcctgtgaagatgccatacactctgctttatccttctagtgaggaaggattgactg |
6319938 |
T |
|
| Q |
201 |
gccgaggcattcctaatagtatct |
224 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
6319937 |
gcagaggcattcctaatagtatct |
6319914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7470190 - 7469978
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||| |||||| | |||| ||||| |||||||||||||||| |||||||||| | || |
|
|
| T |
7470190 |
ccttggagagagaattgaaggtgatctctggacttctgattcacagccaaaacaggcctacaagaagtttggaaagaagttgtctgaaattgagaaaaac |
7470091 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
|| | |||||||||||||||||||||| |||| ||||| | ||||| ||||||||| ||||||| || ||||||||| ||||||||||||||||||||| |
|
|
| T |
7470090 |
ctcattcaaaggaacaatgatgagacactgaggaatcgaaatggacctgtgaagatgtcatatacactgctttatcctactagtgaggaaggattgactt |
7469991 |
T |
|
| Q |
201 |
gccgaggcattcc |
213 |
Q |
| |
|
| |||||||||| |
|
|
| T |
7469990 |
ccagaggcattcc |
7469978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 6422964 - 6422752
Alignment:
| Q |
1 |
ccttggagatagaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaa |
100 |
Q |
| |
|
|||||| || ||||| |||||||| ||||||||| ||| |||| |||||||| |||| ||||| ||||| || |||||||||||||||||| | || |
|
|
| T |
6422964 |
ccttggggagagaatcgaaggtgatctttggacttctgatgcacagccaaaagaggcctacaagaagtttgcaaggaagttggctgaaattgaggaaaag |
6422865 |
T |
|
| Q |
101 |
ctaactcaaaggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgactt |
200 |
Q |
| |
|
||| | |||||||| ||| ||| |||||||||| || ||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
6422864 |
ctagttaaaaggaacgctgacgagtcattgagaaaccgatacgggcctgtgaagatgccatacactctgctttatccttctagtgaagaaggattgactt |
6422765 |
T |
|
| Q |
201 |
gccgaggcattcc |
213 |
Q |
| |
|
| |||||||||| |
|
|
| T |
6422764 |
tcagaggcattcc |
6422752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 6389679 - 6389477
Alignment:
| Q |
11 |
agaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaactaactcaaa |
110 |
Q |
| |
|
||||| |||||||| |||||||| |||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||| || || || | | ||| |
|
|
| T |
6389679 |
agaatcgaaggtgatctttggacttacgattcagagccagtagaggccttcaagaagtttggaaagaagttggctgaaattgagcaaaagctcattgaaa |
6389580 |
T |
|
| Q |
111 |
ggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgacttgccgaggcat |
210 |
Q |
| |
|
||||||| ||||| |||||||||| || | || ||||||||||||||||| ||| | || |||||||| |||||| ||||||||||| | ||||||| |
|
|
| T |
6389579 |
ggaacaacgatgaatcattgagaaacaggaatgggccagtgaagatgccatacactgtgctctatccttcaagtgagccaggattgactttcagaggcat |
6389480 |
T |
|
| Q |
211 |
tcc |
213 |
Q |
| |
|
||| |
|
|
| T |
6389479 |
tcc |
6389477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 6408928 - 6408726
Alignment:
| Q |
11 |
agaattgaaggtgacaattggacttcagattcacaaccaaaagaagccttcaagaggtttggaaagaagttggctgaaattgaacagaaactaactcaaa |
110 |
Q |
| |
|
||||| |||||||| |||||||| |||||| | ||| ||| |||||||||| ||||||||||||||||||||||||||| || || || | | ||| |
|
|
| T |
6408928 |
agaatcgaaggtgatctttggacttacgattcagagccagtagaggccttcaagaagtttggaaagaagttggctgaaattgagcaaaagctcattgaaa |
6408829 |
T |
|
| Q |
111 |
ggaacaatgatgagacattgagaaatcggtacggaccagtgaagatgccatatactctactttatccttctagtgaggaaggattgacttgccgaggcat |
210 |
Q |
| |
|
||||||| ||||| |||||||||| || | || || |||||||||||||| ||| | || |||||||| |||||| ||||||||||| | ||||||| |
|
|
| T |
6408828 |
ggaacaacgatgaatcattgagaaacaggaatgggcctgtgaagatgccatacactgtgctctatccttcaagtgagccaggattgactttcagaggcat |
6408729 |
T |
|
| Q |
211 |
tcc |
213 |
Q |
| |
|
||| |
|
|
| T |
6408728 |
tcc |
6408726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 153 - 224
Target Start/End: Complemental strand, 42691826 - 42691755
Alignment:
| Q |
153 |
agatgccatatactctactttatccttctagtgaggaaggattgacttgccgaggcattcctaatagtatct |
224 |
Q |
| |
|
||||||| |||||| | ||| |||||||||||||||||||| | |||| |||| |||||||||||||||| |
|
|
| T |
42691826 |
agatgccttatactttgcttcatccttctagtgaggaaggactaacttttagaggaattcctaatagtatct |
42691755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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