View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_57 (Length: 237)
Name: NF8172_low_57
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7755431 - 7755208
Alignment:
| Q |
1 |
gacttgtaaactatcatctctctcagattctctcttttttagttgaatcattttctcctcgcgctcctttgatatctctcattcttcatcttgtcattct |
100 |
Q |
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| T |
7755431 |
gacttgtaaactatcaactctctcagattctctcttttttagttgaatcattttctcctcgcgctcctttgatatctctcattcttcatcttgtcattct |
7755332 |
T |
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| Q |
101 |
atgcagctatgaatctgactttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaaatcaaacacctagtcggcctcaat |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7755331 |
atgcagctatgaatctgagtttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaaatcaaacacctagtcggcctcaat |
7755232 |
T |
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| Q |
201 |
actcgtttcaaacaggtgaaatct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7755231 |
actcgtttcaaacaggtgaaatct |
7755208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 224
Target Start/End: Complemental strand, 7838871 - 7838724
Alignment:
| Q |
77 |
tctcattcttcatcttgtcattctatgcagctatgaatctgactttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaa |
176 |
Q |
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| T |
7838871 |
tctcattcatcatattgtatttctatgcagctatgaatctgagtttattgagaagattgtgagagacatctcagctaaactacctcccacgcctttacaa |
7838772 |
T |
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| Q |
177 |
atcaaacacctagtcggcctcaatactcgtttcaaacaggtgaaatct |
224 |
Q |
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| T |
7838771 |
attaaacacctagttggactcgattctcgtttcgaacaggtgaaatct |
7838724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 7762436 - 7762320
Alignment:
| Q |
104 |
cagctatgaatctgactttattgaaaagattgtcagagatatctctactaaactaccgaccgtgcctttacaaatcaaacacctagtcggcctcaatact |
203 |
Q |
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||||||||||| ||| |||||||| |||||||||| ||| ||||| |||||||||| || | ||||||||||| |||||||||||||| ||| || || |
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| T |
7762436 |
cagctatgaatatgagtttattgagaagattgtcaaagagatctcagctaaactacctcccatacctttacaaattaaacacctagtcggactcgattct |
7762337 |
T |
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| Q |
204 |
cgtttcaaacaggtgaa |
220 |
Q |
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|||||| |||||||||| |
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| T |
7762336 |
cgtttcgaacaggtgaa |
7762320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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