View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_58 (Length: 229)
Name: NF8172_low_58
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 11664481 - 11664288
Alignment:
| Q |
20 |
caaattctccacaattccaatatttttgtttaatccattgttcccagtgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactct |
119 |
Q |
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| T |
11664481 |
caaattctccacaattccaatatttttgtttaatccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactct |
11664382 |
T |
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| Q |
120 |
tttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcat |
213 |
Q |
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| T |
11664381 |
tttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccatttacttcat |
11664288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 7344015 - 7344208
Alignment:
| Q |
20 |
caaattctccacaattccaatatttttgtttaatccattgttcccagtgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactct |
119 |
Q |
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| T |
7344015 |
caaattctccatagttccaatatctttgtttaatccagtgtttccaatgaaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactct |
7344114 |
T |
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| Q |
120 |
tttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcat |
213 |
Q |
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| T |
7344115 |
tttgcaccgcccattattggcattcttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacgccactcacttcat |
7344208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 11655963 - 11655831
Alignment:
| Q |
81 |
gaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtt |
180 |
Q |
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| T |
11655963 |
gaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaatgttcacacgactcacatagttaggtt |
11655864 |
T |
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| Q |
181 |
tatatgtttggcccaacacaccactcacttcat |
213 |
Q |
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| T |
11655863 |
tatatgtttggcccaacacaccacttacttcat |
11655831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 11669731 - 11669599
Alignment:
| Q |
81 |
gaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtt |
180 |
Q |
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| T |
11669731 |
gaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaatgttcacacgactcacatagttagatt |
11669632 |
T |
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| Q |
181 |
tatatgtttggcccaacacaccactcacttcat |
213 |
Q |
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| T |
11669631 |
tatatgtttggcccaacacaccacttacttcat |
11669599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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