View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8172_low_61 (Length: 218)

Name: NF8172_low_61
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8172_low_61
NF8172_low_61
[»] chr4 (1 HSPs)
chr4 (41-200)||(55907344-55907503)
[»] chr2 (2 HSPs)
chr2 (41-198)||(1036086-1036243)
chr2 (127-178)||(44575173-44575224)
[»] chr5 (1 HSPs)
chr5 (128-196)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (126-179)||(6403848-6403901)
[»] chr3 (1 HSPs)
chr3 (131-196)||(513428-513493)
[»] chr7 (2 HSPs)
chr7 (150-190)||(10168825-10168865)
chr7 (150-190)||(10176350-10176390)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 55907344 - 55907503
Alignment:
Q  41 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  141 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaatt 55907503  T

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Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 1036086 - 1036243
Alignment:
Q  41 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  141 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaa 1036243  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  127 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 178  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  128 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 196  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  126 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 179  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  131 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 196  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  150 gtctccaaacagtttctctcagtcaccaacactcttcgatt 190  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  150 gtctccaaacagtttctctcagtcaccaacactcttcgatt 190  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

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