View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_7 (Length: 539)
Name: NF8172_low_7
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 16 - 523
Target Start/End: Original strand, 4567024 - 4567536
Alignment:
| Q |
16 |
aagaaactttaggccctataatcttaa-atataatatgataacataatacctaatcaacctaatctgtgaagacatgaaatattaatcaaaataagttgt |
114 |
Q |
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| T |
4567024 |
aagaaactttaggccataggatcttaacatataatatgataacataatacctaatcaacctaatctgtgaagacatgaaatattaatcaaaataagttgt |
4567123 |
T |
|
| Q |
115 |
aggtccattagttacgtcaggtgcatgtgaaactttccagatataaagatgataggccagagcatgtgcacgaaccatcatcatcattatatactccaat |
214 |
Q |
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| T |
4567124 |
aggtccattagttacgtcaggtgcatgtgaaactttccagatataaagatgataggccagagcatgtgcacgaaccatcatcatcattatatactccaat |
4567223 |
T |
|
| Q |
215 |
ccattttttacgttttagattaattaaatgtaaacaaaagccattaattgaagatttcccattattttatgtttggtagttacta----gtattagtaat |
310 |
Q |
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| T |
4567224 |
ccattttttacgttttagattaattaaatgtaaacaaaagccattaattgaagatttgccattattttatgtttggtagttactagtacgtattagtaat |
4567323 |
T |
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| Q |
311 |
caatcaaatcatcctcatatccacactggatttgtcgtacacattaaaataattgatatgcttgctgcaattctagaatttaatattgccatctcactca |
410 |
Q |
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| T |
4567324 |
caatcaaatcatcctcatatccacactagatttgtcgtacacattaaaataattgatatgcttgctgcaattctagaatttaatattgccatctcactca |
4567423 |
T |
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| Q |
411 |
tctatgattctcattttaatttgttctaaggtctacatagtcccaccatatttggaccaattgcatgtgttttaatagctattaccatcaaggaaaagtt |
510 |
Q |
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| T |
4567424 |
tttatgattctcattttaatttgttctaaggtctacatagtcccaccatatttggaccaattgcatgtgttttaatagctattaccatcaaggaaaagtt |
4567523 |
T |
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| Q |
511 |
tgctctaacattc |
523 |
Q |
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| T |
4567524 |
tgctctaacattc |
4567536 |
T |
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