View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8172_low_9 (Length: 484)
Name: NF8172_low_9
Description: NF8172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8172_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Original strand, 40763189 - 40763637
Alignment:
| Q |
18 |
attgcattgattacatctgaagcagttcttgtgaaaaacattaccatcagcagataatgtatcaaccaagtgaacagttttatcacaaaccttgcatttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40763189 |
attgcattgattacatctgaagcagttcttgtgaaaaacattaccatcagcagataatgtatcaaccaagtgaacagttttatcacaaaccttgcatttc |
40763288 |
T |
|
| Q |
118 |
tgttgggttccagtgaaagacatggttatcaatttgtttaataaacttcccctctatctcgtactagctaattattgtttctgttggaattattgaaagc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40763289 |
tgttgggttccagtgaaagacatggttatcaatttgtttaataaacttcccctctatctcgtactagctgattattgtttctgttggaattattgaaagc |
40763388 |
T |
|
| Q |
218 |
tagcacagaaaatggtgagggttcagctaaaacaccaaagatattgagctatatatggttcaaataacataactataatattgtga-cctttgaagttgc |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40763389 |
tagcacagaaaatggtgagggttcggctaaaacaccaaagatattgagctatatatggttcaaataacataactataatattgtgaccctttgaagttgc |
40763488 |
T |
|
| Q |
317 |
tgtggtgtgcgaaattataggtctagaaaacgaaaaaaggatgtgaaatgggtggagaaggtgcacacacctataattttgcaagcttcactgccttcag |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40763489 |
tgtggtgtgcgaaattataggtctagaaaaagaaaaaaggatgtgaaatgggtggagaaggtgtgcacacctataattttgcaagcttcactgccttcag |
40763588 |
T |
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| Q |
417 |
attttgcatggacacaaatatatcattgtctaattgtagctctccgagt |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40763589 |
attttgcatggacacaaatatatcattgtctaattgtagctctccgagt |
40763637 |
T |
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