View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8173_high_1 (Length: 473)
Name: NF8173_high_1
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8173_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Original strand, 44034364 - 44034806
Alignment:
| Q |
13 |
aacctgtgcaggttaagggaatccatttatggcacaactttaaggtttattctttttcagatgtttattctcctatatgtgtaaacaatccattctggta |
112 |
Q |
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| T |
44034364 |
aacctgtgcaggttaagggaatccatttatggcacaactttaaggtttattctttttcagatgtttattctcctatatgtgtaaacaatccattctggta |
44034463 |
T |
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| Q |
113 |
taaatacacatcctctaatctcaaatttctacaaaccaaatcaaactcacttaaatcatc-----aatata--tagctacctaccttcatagaaatatgg |
205 |
Q |
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| T |
44034464 |
taaatacacatcctctaatctcaaatttctacaaaccaaatcaaactcacttaaatcatcatcataatatagctacctacctaccttcatagaa--atgg |
44034561 |
T |
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| Q |
206 |
atttgttggcatcattaacagagaacaaaccagtagttatgttcagcaaaagcacttgtcccatgagtcacacagtgagggaactgataaggggttttgg |
305 |
Q |
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| T |
44034562 |
atttgttggcatcattaacagagaacaaaccagtagttatgttcagcaaaagcacttgtcccatgagtcacacagtgagggaactgataaggggttttgg |
44034661 |
T |
|
| Q |
306 |
tactgagccttatgttattgagattgataaaatgccaaatggacaacaaatagagagagcactgattcagcttggacgtagaccaactgtacctgctgtt |
405 |
Q |
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| T |
44034662 |
tactgagccttatgttattgagattgataaaatgccaaatggacaacaaatagagagagcactgattcagcttggacgtagaccaactgtacctgctgtt |
44034761 |
T |
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| Q |
406 |
ttcataggacaacaattcataggtggtattgatgaactcataagc |
450 |
Q |
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| T |
44034762 |
ttcataggacaacaattcataggtggtattgatgaactcataagc |
44034806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 44028294 - 44028339
Alignment:
| Q |
387 |
accaactgtacctgctgttttcataggacaacaattcataggtggt |
432 |
Q |
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| T |
44028294 |
accaagtgtacctgctgttttcataggacaacaattcagaggtggt |
44028339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 450
Target Start/End: Complemental strand, 39828603 - 39828472
Alignment:
| Q |
319 |
gttattgagattgataaaatgccaaatggacaacaaatagagagagcactgattcagcttggacgtagaccaactgtacctgctgttttcataggacaac |
418 |
Q |
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| T |
39828603 |
gttattgagattgacaaaatggtaaatggtgagaaaatagaaagtgcattggttcagcttggttgtcgaccaagtgtgccagctgtgtttataggacaac |
39828504 |
T |
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| Q |
419 |
aattcataggtggtattgatgaactcataagc |
450 |
Q |
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| T |
39828503 |
aatttgtaggtggtgttaatcaagtcataagc |
39828472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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