View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8173_high_11 (Length: 239)
Name: NF8173_high_11
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8173_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35836210 - 35836432
Alignment:
| Q |
1 |
agcaagcttatccttcacctacttaacttaatgttcattgcctaatcctcctaactaaaaaggccaggaactaattagttttaccattcttgcttaacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35836210 |
agcaagcttatccttcacctacttaacttaatgttcattgcctaatcctcctaactaaaaaggccaggaactaattagttttaccattcttgcttaacta |
35836309 |
T |
|
| Q |
101 |
attcccatcaccagaagatttcaggtaaagtgtttcgccgccatcaccagagtgaccactagagcttccaccgcggccatcagtgcttccaatgtcttgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35836310 |
attcccatcaccagaagatttcaggtaaagtgtttcgccgccatcaccagagtgaccactagagcttccaccgcggccatcagtgcttccaatgtcttgc |
35836409 |
T |
|
| Q |
201 |
ttaccactgccgtgcaaaccatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
35836410 |
ttaccactgccgtgcaaaccatc |
35836432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 44549679 - 44549743
Alignment:
| Q |
57 |
aaaaaggccaggaactaattagttttaccattcttgcttaactaattcccatcaccagaagattt |
121 |
Q |
| |
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||||||||||| | |||||||| | || |||||||||||| ||||||||||||||||||||||| |
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| T |
44549679 |
aaaaaggccagtagttaattagtataacgattcttgcttaattaattcccatcaccagaagattt |
44549743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 47688260 - 47688208
Alignment:
| Q |
97 |
actaattcccatcaccagaagatttcaggtaaagtgtttcgccgccatcacca |
149 |
Q |
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|||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |
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| T |
47688260 |
actagttcccatcatcagaagatttgaggtaaaggttttcgccgccatcacca |
47688208 |
T |
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