View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8173_high_5 (Length: 354)

Name: NF8173_high_5
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8173_high_5
NF8173_high_5
[»] chr8 (1 HSPs)
chr8 (101-246)||(14934501-14934646)
[»] chr3 (11 HSPs)
chr3 (16-81)||(29726633-29726698)
chr3 (97-238)||(30201117-30201258)
chr3 (98-238)||(30227292-30227432)
chr3 (171-238)||(36321340-36321407)
chr3 (91-139)||(30223140-30223188)
chr3 (171-238)||(29856790-29856857)
chr3 (92-139)||(36333932-36333979)
chr3 (91-144)||(29713018-29713071)
chr3 (182-235)||(36309840-36309893)
chr3 (181-238)||(36313941-36313998)
chr3 (91-127)||(30230393-30230429)
[»] chr1 (2 HSPs)
chr1 (102-238)||(16955665-16955801)
chr1 (106-238)||(16966187-16966319)
[»] chr5 (3 HSPs)
chr5 (90-238)||(25784270-25784418)
chr5 (116-238)||(16053597-16053719)
chr5 (91-127)||(11635019-11635055)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 101 - 246
Target Start/End: Original strand, 14934501 - 14934646
Alignment:
Q  101 ggtgcgccacatgtgaggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcctgtggaggatg 200  Q
    |||| |||||||||||||||||||| | ||||||||||| | |||| |||||| |||||||||||  | ||||||||||| ||||||||| ||||| |||    
T  14934501 ggtgtgccacatgtgaggatccttgaaaatattccaccaaagagggcacacttgacatgcactagccaatatttcaatggcaccaagcctttggagaatg 14934600  T
Q  201 tttgctgtcacatctcttggaagttcaagccaatttggatgaacag 246  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||    
T  14934601 tttgcagtcacatctcttggaagttcaagccaatttggctgaacag 14934646  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 29726698 - 29726633
Alignment:
Q  16 aacttctctcaactgcattgcaaaaaaccttcaccaaattatccccatagttgtagcgagcatagt 81  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29726698 aacttctctcaactgcattgcaaaaaatcttcaccaaattatccccatagttgtagcgagcatagt 29726633  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 238
Target Start/End: Complemental strand, 30201258 - 30201117
Alignment:
Q  97 gaatggtgcgccacatgtgaggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcctgtggag 196  Q
    |||||||| |||||||| ||||||||||||| || |||||||| | |||  |||||| ||||||||| |  |  ||||||||||||| |||||| || ||    
T  30201258 gaatggtgtgccacatgagaggatccttgcaaatgttccaccatagaggacacacttgacatgcacttgtcacaatttcaatggtactaagcctttgaag 30201159  T
Q  197 gatgtttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
     |||||| |||| |  ||| | ||||||||||||||||||||    
T  30201158 aatgttttctgtaatgtctttaggaagttcaagccaatttgg 30201117  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 30227432 - 30227292
Alignment:
Q  98 aatggtgcgccacatgtgaggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcctgtggagg 197  Q
    |||||||||||||||| ||||||||||||| || |||||| | | |||  |||||| ||||||||| |  |  || || |||||||||||||| || ||     
T  30227432 aatggtgcgccacatgagaggatccttgcaaatgttccactatagaggacacacttgacatgcacttgtcacaatctcgatggtaccaagcctttgaaga 30227333  T
Q  198 atgtttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
    ||||||| ||| |  ||||| ||||||||||||||||||||    
T  30227332 atgtttgttgtgatgtctctaggaagttcaagccaatttgg 30227292  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 36321340 - 36321407
Alignment:
Q  171 atttcaatggtaccaagcctgtggaggatgtttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
    |||||||  ||||||||||| || ||||||||| |||||| ||| |||||||| ||||||||||||||    
T  36321340 atttcaaacgtaccaagcctctgaaggatgttttctgtcaaatcacttggaagatcaagccaatttgg 36321407  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 30223188 - 30223140
Alignment:
Q  91 tcatgcgaatggtgcgccacatgtgaggatccttgcagatattccacca 139  Q
    ||||| ||||||||||||||||| ||||||||||||| || ||||||||    
T  30223188 tcatgtgaatggtgcgccacatgagaggatccttgcaaatgttccacca 30223140  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 238
Target Start/End: Complemental strand, 29856857 - 29856790
Alignment:
Q  171 atttcaatggtaccaagcctgtggaggatgtttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
    |||||||| ||| ||||||| || |||||||||||||| |  |||||  |||||||||||||||||||    
T  29856857 atttcaattgtatcaagcctttgaaggatgtttgctgtgatttctctcagaagttcaagccaatttgg 29856790  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 36333932 - 36333979
Alignment:
Q  92 catgcgaatggtgcgccacatgtgaggatccttgcagatattccacca 139  Q
    ||||||||| |||||||||||| ||||||||||||| || ||||||||    
T  36333932 catgcgaatagtgcgccacatgagaggatccttgcaaatgttccacca 36333979  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 29713071 - 29713018
Alignment:
Q  91 tcatgcgaatggtgcgccacatgtgaggatccttgcagatattccaccacaaag 144  Q
    ||||| ||||||| ||||||||  ||||||||||||| ||||||| ||||||||    
T  29713071 tcatgtgaatggtacgccacattagaggatccttgcaaatattccgccacaaag 29713018  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 36309840 - 36309893
Alignment:
Q  182 accaagcctgtggaggatgtttgctgtcacatctcttggaagttcaagccaatt 235  Q
    ||||||||| || |||||||||||||||| |||| | ||||| |||||||||||    
T  36309840 accaagcctatgaaggatgtttgctgtcaaatctataggaagatcaagccaatt 36309893  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 36313941 - 36313998
Alignment:
Q  181 taccaagcctgtggaggatgtttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
    |||||||||| || || |||||| |||||| ||| |||||||| ||||||||||||||    
T  36313941 taccaagcctctgaagaatgttttctgtcaaatcacttggaagatcaagccaatttgg 36313998  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 30230429 - 30230393
Alignment:
Q  91 tcatgcgaatggtgcgccacatgtgaggatccttgca 127  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  30230429 tcatgtgaatggtgcgccacatgcgaggatccttgca 30230393  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 16955665 - 16955801
Alignment:
Q  102 gtgcgccacatgtgaggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcctgtggaggatgt 201  Q
    |||||||||||| ||||||||||||| ||||||||||| |||||| |||||| |||| |||| |  |  |||||||| ||| ||||||| ||||| ||||    
T  16955665 gtgcgccacatgagaggatccttgcaaatattccaccataaagggcacacttgacatacacttgtgacaatttcaatagtatcaagcctctggagaatgt 16955764  T
Q  202 ttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
    ||  || || |||| |||| |||||||||||||||||    
T  16955765 ttattgccaaatcttttggtagttcaagccaatttgg 16955801  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 106 - 238
Target Start/End: Original strand, 16966187 - 16966319
Alignment:
Q  106 gccacatgtgaggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcctgtggaggatgtttgc 205  Q
    |||||||||||||||||||||| ||||||||||| |||||  |||||| |||| |||| |  | ||||||||| ||| ||||||| ||||| || |||      
T  16966187 gccacatgtgaggatccttgcaaatattccaccataaaggacacacttgacatacacttgtgactatttcaatagtatcaagcctctggagaatatttat 16966286  T
Q  206 tgtcacatctcttggaagttcaagccaatttgg 238  Q
    ||||| |||||| || |||||||||||||||||    
T  16966287 tgtcaaatctctgggtagttcaagccaatttgg 16966319  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 25784270 - 25784418
Alignment:
Q  90 gtcatgcgaatggtgcgccacatgtgaggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcc 189  Q
    ||||| ||||||| ||||||||||  |||||| || || ||||||||||| | |||| |||||| |||| |||| | || ||  || | ||||  |||||    
T  25784270 gtcattcgaatggagcgccacatgaaaggatctttacatatattccaccatagagggcacacttgacatacacttgtaactacgtcgaaggtattaagcc 25784369  T
Q  190 tgtggaggatgtttgctgtcacatctcttggaagttcaagccaatttgg 238  Q
    |  |||  ||||| | |||||||||||||||||||||||||||||||||    
T  25784370 ttcggaaaatgttggttgtcacatctcttggaagttcaagccaatttgg 25784418  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 238
Target Start/End: Original strand, 16053597 - 16053719
Alignment:
Q  116 aggatccttgcagatattccaccacaaagggaacactttacatgcactagaaagtatttcaatggtaccaagcctgtggaggatgtttgctgtcacatct 215  Q
    |||||||||||| || |||||||| | |||| |||||   |||||||| |  |  |||||||  | ||||||||| || ||||| |||| ||||| ||||    
T  16053597 aggatccttgcaaatgttccaccaaagagggcacactccgcatgcacttgttaaaatttcaaatgcaccaagcctctgaaggatatttgatgtcaaatct 16053696  T
Q  216 cttggaagttcaagccaatttgg 238  Q
    || ||||| ||||||||||||||    
T  16053697 ctaggaagatcaagccaatttgg 16053719  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 11635055 - 11635019
Alignment:
Q  91 tcatgcgaatggtgcgccacatgtgaggatccttgca 127  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  11635055 tcatgcgaatggtacgccacatgagaggatccttgca 11635019  T

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