View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8173_low_15 (Length: 230)

Name: NF8173_low_15
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8173_low_15
NF8173_low_15
[»] chr6 (3 HSPs)
chr6 (16-168)||(33839485-33839637)
chr6 (27-164)||(33843409-33843546)
chr6 (184-215)||(33839446-33839477)
[»] chr4 (12 HSPs)
chr4 (31-162)||(35969071-35969203)
chr4 (34-164)||(55966040-55966171)
chr4 (40-112)||(36642844-36642916)
chr4 (37-156)||(36910316-36910436)
chr4 (43-111)||(38862527-38862595)
chr4 (43-156)||(18364993-18365107)
chr4 (43-156)||(36597818-36597932)
chr4 (37-123)||(36612606-36612692)
chr4 (46-112)||(36665121-36665187)
chr4 (79-151)||(18083864-18083937)
chr4 (34-123)||(28125562-28125651)
chr4 (79-151)||(36616743-36616816)
[»] chr3 (6 HSPs)
chr3 (45-112)||(5374954-5375021)
chr3 (49-112)||(5356546-5356609)
chr3 (49-112)||(5363188-5363251)
chr3 (49-112)||(5368404-5368467)
chr3 (49-112)||(5369222-5369285)
chr3 (66-118)||(13490163-13490215)
[»] chr7 (1 HSPs)
chr7 (47-117)||(44500704-44500774)
[»] chr1 (1 HSPs)
chr1 (51-161)||(42602084-42602194)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 33839637 - 33839485
Alignment:
Q  16 tttcaaaagtagacaagtctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839637 tttcaaaagtagacaagtctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtact 33839538  T
Q  116 ttgccatgatttgaggctttgttttacattcatcttaagattctttattatta 168  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839537 ttggcatgatttgaggctttgttttacattcatcttaagattctttattatta 33839485  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 33843546 - 33843409
Alignment:
Q  27 gacaagtctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatt 126  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||| ||||||  ||||||||||||| ||| |||||||    
T  33843546 gacaagtctcctatgattctattatgctggctgctagaccttgctaacttagaatcattaacagtcacttcaaaaactcttcaggtaccttggcatgatt 33843447  T
Q  127 tgaggctttgttttacattcatcttaagattctttatt 164  Q
    || |||||| |||||||||||||| ||| |||||||||    
T  33843446 tgcggctttattttacattcatctcaagtttctttatt 33843409  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 33839477 - 33839446
Alignment:
Q  184 aaatccactgacttgcataactgatcctaatt 215  Q
    ||||||||||||||||||||||||||||||||    
T  33839477 aaatccactgacttgcataactgatcctaatt 33839446  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 162
Target Start/End: Original strand, 35969071 - 35969203
Alignment:
Q  31 agtctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgag 130  Q
    ||||||||||| ||||||| ||||||||||||||||| || ||  || ||||||| | ||||||||||| |||||||||||||| | | |||| |||||     
T  35969071 agtctcctatggttctattgagctggctgctagacctcgccaatgtaaaatcattgatagtctcttcaattactcttcaggtacctaggcatgttttgaa 35969170  T
Q  131 gc-tttgttttacattcatcttaagattcttta 162  Q
    || ||  |||||| ||| | |||||||||||||    
T  35969171 gcattaattttactttcttgttaagattcttta 35969203  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 55966171 - 55966040
Alignment:
Q  34 ctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggct 133  Q
    |||||||| ||||||| ||||||||||||||||||||||   ||  |||||| | |||||||| ||  ||||||||||||| ||| ||||| || | |||    
T  55966171 ctcctatggttctattgagctggctgctagaccttgctagtgtaagatcattgaaagtctctttaacaactcttcaggtaccttggcatgaatttatgct 55966072  T
Q  134 t-tgttttacattcatcttaagattctttatt 164  Q
    |   |||||||||||||||| |||||||||||    
T  55966071 tcaattttacattcatcttaggattctttatt 55966040  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 36642916 - 36642844
Alignment:
Q  40 tgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    |||||||| ||||||||||||||||| |||| ||  |||||||||| | |||| |||||| ||||||||||||    
T  36642916 tgattctactcagctggctgctagactttgcgaatgtagaatcatttagagtcacttcaactactcttcaggt 36642844  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 156
Target Start/End: Original strand, 36910316 - 36910436
Alignment:
Q  37 ctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggcttt- 135  Q
    ||||| ||||||| |||| ||||| ||||||||| ||  ||||||||||  ||||| |||||| |||||||||||||| ||| |||| ||| | |||||     
T  36910316 ctatggttctattaagcttgctgcaagaccttgccaatgtagaatcattggcagtcacttcaactactcttcaggtaccttgtcatgttttcaagcttta 36910415  T
Q  136 gttttacattcatcttaagat 156  Q
     |||||| ||| |||||||||    
T  36910416 tttttactttcttcttaagat 36910436  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 38862595 - 38862527
Alignment:
Q  43 ttctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcagg 111  Q
    ||||||||||||||||||||||||||   ||  ||||||||||| ||||| |||||||||| |||||||    
T  38862595 ttctattcagctggctgctagaccttctcaatttagaatcattagcagtcacttcaagtacgcttcagg 38862527  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 18364993 - 18365107
Alignment:
Q  43 ttctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggctttg-tttta 141  Q
    ||||||| |||||||||| ||||||||| ||  ||||||||||  ||||| |||||| |||||||||||| | ||| |||| ||| |  ||||| |||||    
T  18364993 ttctattaagctggctgcaagaccttgccaatgtagaatcattggcagtcacttcaactactcttcaggttccttgtcatgttttaaacctttgttttta 18365092  T
Q  142 cattcatcttaagat 156  Q
    | ||| |||||||||    
T  18365093 ctttcttcttaagat 18365107  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 36597932 - 36597818
Alignment:
Q  43 ttctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggctttg-tttta 141  Q
    ||||||| |||||||||| ||||||||| ||  ||||||||||  ||||| |||||| |||||||||||| | ||| |||| ||| |  ||||| |||||    
T  36597932 ttctattaagctggctgcaagaccttgccaatgtagaatcattggcagtcacttcaactactcttcaggttccttgtcatgttttaaacctttgttttta 36597833  T
Q  142 cattcatcttaagat 156  Q
    | ||| |||||||||    
T  36597832 ctttcttcttaagat 36597818  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 36612692 - 36612606
Alignment:
Q  37 ctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatg 123  Q
    ||||| ||||| |||| ||||||| ||| |||||  |  || ||||||| ||||| ||||||| |||||||||||||||||| ||||    
T  36612692 ctatgcttctactcagttggctgcaagatcttgccgatgtaaaatcattgacagtttcttcaactactcttcaggtactttgtcatg 36612606  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 36665187 - 36665121
Alignment:
Q  46 tattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    |||||| ||||||||||||| |||| ||  |||| |||||| || ||||||||| ||||||||||||    
T  36665187 tattcaactggctgctagactttgccaatgtagagtcattagcactctcttcaactactcttcaggt 36665121  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 18083864 - 18083937
Alignment:
Q  79 aatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggcttt-gttttacattcatctt 151  Q
    ||||||| | ||||||||||| |||||| ||||||| ||| ||||||||||| ||||  ||||||||| |||||    
T  18083864 aatcattgaaagtctcttcaattactctccaggtaccttggcatgatttgagactttaattttacattaatctt 18083937  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 123
Target Start/End: Original strand, 28125562 - 28125651
Alignment:
Q  34 ctcctatgattctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatg 123  Q
    |||| ||| ||||||| || |||||||||| |||||| ||  || | ||||| ||| ||||||||| |||||||||||||| ||| ||||    
T  28125562 ctccaatggttctattgagttggctgctaggccttgccaaagtaaagtcattgacattctcttcaactactcttcaggtacattggcatg 28125651  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 36616816 - 36616743
Alignment:
Q  79 aatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggcttt-gttttacattcatctt 151  Q
    ||||||| | ||||||||||| |||||| ||||||| ||| ||||||||||| ||||  ||||||||| |||||    
T  36616816 aatcattgaaagtctcttcaattactctccaggtaccttggcatgatttgagactttaattttacattaatctt 36616743  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 5374954 - 5375021
Alignment:
Q  45 ctattcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    |||||||||||||||||||| |||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  5374954 ctattcagctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 5375021  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 5356546 - 5356609
Alignment:
Q  49 tcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    |||||||||||||||| ||||| || ||| ||||||| ||||||||||| | ||||||||||||    
T  5356546 tcagctggctgctagagcttgccaatataaaatcattgacagtctcttctaatactcttcaggt 5356609  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 5363188 - 5363251
Alignment:
Q  49 tcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    ||||||||||||| || |||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  5363188 tcagctggctgcttgagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 5363251  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 5368404 - 5368467
Alignment:
Q  49 tcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    ||||||||||||| || |||||||| ||  ||||||||||||||||||| | ||||||||||||    
T  5368404 tcagctggctgctcgagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt 5368467  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 5369222 - 5369285
Alignment:
Q  49 tcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggt 112  Q
    |||||||||||| ||| |||||||| ||  ||||||| ||||||||||| | ||||||||||||    
T  5369222 tcagctggctgcaagagcttgctaatatcaaatcattgacagtctcttctaatactcttcaggt 5369285  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 13490215 - 13490163
Alignment:
Q  66 cttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttg 118  Q
    |||||||| || |||||||| || || ||||||| ||||||||||||||||||    
T  13490215 cttgctaatattgaatcattgactgtgtcttcaactactcttcaggtactttg 13490163  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 117
Target Start/End: Complemental strand, 44500774 - 44500704
Alignment:
Q  47 attcagctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtacttt 117  Q
    |||||||||||| ||||| |||||||||||| ||||||| || |||||| ||| |||||||||||||||||    
T  44500774 attcagctggctactagagcttgctaacataaaatcattgacggtctctacaactactcttcaggtacttt 44500704  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 42602194 - 42602084
Alignment:
Q  51 agctggctgctagaccttgctaacatagaatcattaacagtctcttcaagtactcttcaggtactttgccatgatttgaggctttgttttacattcatct 150  Q
    |||||| ||||||||||||| ||  |||||||||| | |||| |||||  || | |||||||||||||||||| |||  | |||| |||||| ||| |||    
T  42602194 agctggttgctagaccttgccaatgtagaatcattgaaagtcacttcacctattattcaggtactttgccatgttttcggactttattttactttcttct 42602095  T
Q  151 taagattcttt 161  Q
    |||||||||||    
T  42602094 taagattcttt 42602084  T

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