View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8173_low_3 (Length: 432)
Name: NF8173_low_3
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8173_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 2084574 - 2084976
Alignment:
| Q |
1 |
tataatgattgatttagcattgctaaatattgcaacaagcaccttaacgaagtttaatgaacaagaaaaacccttaccatacatggataatgtcgtaata |
100 |
Q |
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| T |
2084574 |
tataatgattgatttagcattgctaaatattgcaacaagcaccttaatgaagtttaatgaacaagaaaaacccttaccatacatggataatgtcctaata |
2084673 |
T |
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| Q |
101 |
gaaaataaatgaaggataaaaataatattctctc-aaacaatactgattcgtctatgtatctagtcgtttttcattaactactttatcataccgtccaat |
199 |
Q |
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| T |
2084674 |
gaaaataaatgaaggataaaaataatattctctcaaaacaatactgattcgtctatgtatctagtcgtttttcattaactactttatcataccgtccaat |
2084773 |
T |
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| Q |
200 |
aatcttctccnnnnnnnctctcaaacaataatgattcatctatgtgtctggtcgttttttattaactgctttatcattccgtctagtaatttccataaat |
299 |
Q |
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| T |
2084774 |
aa---tctcctttttttctctcaaacaataatgattcatctatgtgtctggtcgttttttattaactactttatcattccatctagtaattttcataaat |
2084870 |
T |
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| Q |
300 |
tcatatttttaggtaaataagtggggtgtctttaatggaacatctagttgtcactccaatggaacatctagttcttgtccctctaatgtgagttgttgaa |
399 |
Q |
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| T |
2084871 |
tcatatttttaggtaaataagtggggtgtctttaatggaacatctagttgtcactccaatggaacatctagttcttgtcactctaatgtgagttgttgaa |
2084970 |
T |
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| Q |
400 |
tttgtt |
405 |
Q |
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| T |
2084971 |
tttgtt |
2084976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 48190507 - 48190599
Alignment:
| Q |
115 |
gataaaaataatattctctcaaacaatactgattcgtctatgtatctagtcgtttttcattaactactttatcataccgtccaataatcttct |
207 |
Q |
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| T |
48190507 |
gataaaaataatattctctcaaacaataatgattcatctatgtgtccaatcgtttttcattaactactttattgtaccgtgtaataattttct |
48190599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 48190522 - 48190578
Alignment:
| Q |
217 |
ctctcaaacaataatgattcatctatgtgtctggtcgttttttattaactgctttat |
273 |
Q |
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| T |
48190522 |
ctctcaaacaataatgattcatctatgtgtccaatcgtttttcattaactactttat |
48190578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 405
Target Start/End: Original strand, 48191567 - 48191615
Alignment:
| Q |
357 |
aatggaacatctagttcttgtccctctaatgtgagttgttgaatttgtt |
405 |
Q |
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| T |
48191567 |
aatggaacatccagttcctgtcactccaatgtgagttgttgaatttgtt |
48191615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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