View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8173_low_4 (Length: 413)
Name: NF8173_low_4
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8173_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 203 - 393
Target Start/End: Original strand, 2646239 - 2646429
Alignment:
| Q |
203 |
tgacaagagtaacattgttgaataatagaaaattttggaagattagatgtgagtgaaagaaaaatgagggggaatattagaaatgaacacacaaagacta |
302 |
Q |
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| T |
2646239 |
tgacaagattaacattgttgaataatagaaaattttggaagattagatgtgagtgaaagaaaaatgagggggaatattagaaatgaacacacaaagacta |
2646338 |
T |
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| Q |
303 |
acctcaagataataaagtaacttgaactattatagatagagaagctgaaagagggagagattgatgaagaaatgtgacaataggcatggtt |
393 |
Q |
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| T |
2646339 |
acctcaagataataaagtaacttgaactattatagatagagaagctgaaagagggagagattgatgaagaaatgtgacaataggcatggtt |
2646429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 10 - 208
Target Start/End: Original strand, 2645986 - 2646187
Alignment:
| Q |
10 |
attattctaatgcacaa---tttgtgaatgatagtaggtagtaactagatttctagctagtagtcttcttattataagatatgaacaaatataaaaaata |
106 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2645986 |
attattctaatgcgcaagagtttgtgaatgatagtaggtagtaactagatttctagctagaagtcttcttattataagatatgaacaaatataaaaaata |
2646085 |
T |
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| Q |
107 |
attgaagttatggattaacttctatgaaaactacaaagcaagttgtgaggttgacattatagagcactctagtagataacatgattgaagattatgtgac |
206 |
Q |
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|||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2646086 |
attgaagttacggattaacttctttgagaactacaaagcaagttgtgaggttgacattatagagcactctagtagataacatgattgaagattatgtgac |
2646185 |
T |
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| Q |
207 |
aa |
208 |
Q |
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|| |
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| T |
2646186 |
aa |
2646187 |
T |
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