View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8173_low_5 (Length: 406)

Name: NF8173_low_5
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8173_low_5
NF8173_low_5
[»] chr4 (4 HSPs)
chr4 (14-385)||(14349930-14350302)
chr4 (320-366)||(18404845-18404891)
chr4 (317-366)||(16581761-16581810)
chr4 (317-361)||(51954187-51954231)
[»] chr2 (3 HSPs)
chr2 (317-373)||(35203342-35203398)
chr2 (318-351)||(31159597-31159630)
chr2 (317-366)||(42222949-42222998)
[»] chr1 (4 HSPs)
chr1 (317-352)||(40257481-40257516)
chr1 (320-357)||(7129616-7129653)
chr1 (317-350)||(31297307-31297340)
chr1 (317-349)||(10526908-10526940)
[»] chr7 (1 HSPs)
chr7 (317-350)||(15905633-15905666)
[»] chr6 (1 HSPs)
chr6 (317-346)||(20678038-20678067)
[»] chr8 (1 HSPs)
chr8 (320-368)||(6569733-6569781)
[»] chr3 (1 HSPs)
chr3 (317-373)||(49397500-49397556)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 385
Target Start/End: Original strand, 14349930 - 14350302
Alignment:
Q  14 agatgaataataggaatataatagagggatattgatgtagaaacgacctctcataatgtttatgattttagtagctctcacttactgaattatacacatc 113  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14349930 agataaataacaggaatataatagagggatattgatgtagaaacgacctctcataatgtttatgattttagtagctctcacttactgaattatacacatc 14350029  T
Q  114 acatgtattcatattgcgaacaaactaactcagttgtatctaagtttaaactaagtttgtaacaactattaactaactacaataaaaatgtgatatgtaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350030 acatgtattcatattgcgaacaaactaactcagttgtatctaagtttaaactaagtttgtaacaactattaactaactacaataaaaatgtgatatgtaa 14350129  T
Q  214 atctaactatcaattgaaaacat-atctttatcacatcttgacatcttagtataaaatgtaaaccgaattatttggtgtgcccctcccgaatcagtaaca 312  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14350130 atctaactatcaattgaaaacataatctttatcacatcttgacatcttagtataaaatgtaaaccgaattatttggtgtgcccctcccgaatcagtaaca 14350229  T
Q  313 cgtattgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagacgagcaaactcta 385  Q
    ||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14350230 cgtattgaagaagttaaattaacccacccaaattgacacctgagataatagaacatcagacgagcaaactcta 14350302  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 18404845 - 18404891
Alignment:
Q  320 aagaagctaaactaacccacccaaattgacacctaagataatagaac 366  Q
    ||||||||||||||||||||  |||||||||||| ||||||| ||||    
T  18404845 aagaagctaaactaacccacttaaattgacaccttagataatcgaac 18404891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 16581810 - 16581761
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaac 366  Q
    ||||||||||||||||||||| | ||||||| ||||  ||||||||||||    
T  16581810 ttgaagaagctaaactaaccctctcaaattggcaccagagataatagaac 16581761  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 51954231 - 51954187
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgacacctaagataat 361  Q
    |||||||||||||| || ||||||||||||||||||  |||||||    
T  51954231 ttgaagaagctaaattagcccacccaaattgacaccggagataat 51954187  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 35203342 - 35203398
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagac 373  Q
    |||||||||||||| ||||||||  ||||||||||| |||||||| |||||| ||||    
T  35203342 ttgaagaagctaaattaacccacttaaattgacaccaaagataatcgaacatgagac 35203398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Original strand, 31159597 - 31159630
Alignment:
Q  318 tgaagaagctaaactaacccacccaaattgacac 351  Q
    |||||||||||||||| |||||||||||||||||    
T  31159597 tgaagaagctaaactagcccacccaaattgacac 31159630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 42222998 - 42222949
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaac 366  Q
    |||||||| ||||| ||||||||||||||||||||| |||| ||| ||||    
T  42222998 ttgaagaatctaaattaacccacccaaattgacaccgaagagaatcgaac 42222949  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 40257516 - 40257481
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgacacc 352  Q
    ||||||||||||||||| ||||||||||||||||||    
T  40257516 ttgaagaagctaaactagcccacccaaattgacacc 40257481  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 7129616 - 7129653
Alignment:
Q  320 aagaagctaaactaacccacccaaattgacacctaaga 357  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  7129616 aagaagctaaactaacccacctaaattgacaccgaaga 7129653  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 31297340 - 31297307
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgaca 350  Q
    ||||||||| ||||||||||||||||||||||||    
T  31297340 ttgaagaagttaaactaacccacccaaattgaca 31297307  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 10526940 - 10526908
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgac 349  Q
    |||||||||||||| ||||||||||||||||||    
T  10526940 ttgaagaagctaaattaacccacccaaattgac 10526908  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Original strand, 15905633 - 15905666
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgaca 350  Q
    |||||||||||||| |||||||||||||||||||    
T  15905633 ttgaagaagctaaattaacccacccaaattgaca 15905666  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 20678038 - 20678067
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaatt 346  Q
    ||||||||||||||||||||||||||||||    
T  20678038 ttgaagaagctaaactaacccacccaaatt 20678067  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 6569733 - 6569781
Alignment:
Q  320 aagaagctaaactaacccacccaaattgacacctaagataatagaacat 368  Q
    |||||||||||||||||| | |||||||||||| |||| ||| ||||||    
T  6569733 aagaagctaaactaaccccctcaaattgacaccaaagagaatcgaacat 6569781  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 49397500 - 49397556
Alignment:
Q  317 ttgaagaagctaaactaacccacccaaattgacacctaagataatagaacatcagac 373  Q
    |||||||||||||| ||  ||||| ||||||||| |||||||||| |||||| ||||    
T  49397500 ttgaagaagctaaattagtccacctaaattgacatctaagataatcgaacatgagac 49397556  T

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