View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8173_low_6 (Length: 395)

Name: NF8173_low_6
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8173_low_6
NF8173_low_6
[»] chr5 (24 HSPs)
chr5 (1-377)||(37412683-37413059)
chr5 (145-381)||(37824248-37824504)
chr5 (294-381)||(37640225-37640312)
chr5 (1-65)||(37400219-37400283)
chr5 (1-65)||(37703357-37703421)
chr5 (1-65)||(37712313-37712377)
chr5 (145-263)||(37400363-37400481)
chr5 (1-65)||(37640561-37640625)
chr5 (294-381)||(37400532-37400619)
chr5 (294-381)||(37436060-37436147)
chr5 (294-381)||(37533453-37533540)
chr5 (294-381)||(37711977-37712064)
chr5 (181-263)||(37429223-37429305)
chr5 (145-263)||(37697278-37697396)
chr5 (164-263)||(37436198-37436297)
chr5 (294-381)||(37703021-37703108)
chr5 (294-363)||(37594695-37594764)
chr5 (1-65)||(37533789-37533853)
chr5 (1-65)||(37697476-37697540)
chr5 (164-263)||(37533591-37533690)
chr5 (164-263)||(37712115-37712214)
chr5 (1-57)||(37392365-37392421)
chr5 (171-263)||(37640363-37640455)
chr5 (1-69)||(37824580-37824648)
[»] chr3 (1 HSPs)
chr3 (267-381)||(14553463-14553577)
[»] chr4 (2 HSPs)
chr4 (1-65)||(16842283-16842347)
chr4 (292-372)||(24217458-24217538)


Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 37412683 - 37413059
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaatctcgcacatctcacttacttgcatcttgaacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37412683 caactaacacatttggacctttcatttaacaaacttaacggtgaaatcccatcattactttcaaatctcgcacatctcacttacttggatcttgaacaaa 37412782  T
Q  101 atagctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatc 200  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412783 atgcctttaccggtttgatcttgaatatgttccataagcttattaaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatc 37412882  T
Q  201 attgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaatatccaaaattgagtattgtggatttaaataataacat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  37412883 attgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaatatccaaaattgagtattgtggatttaaataataaaat 37412982  T
Q  301 gttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctca 377  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412983 gttaaatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctca 37413059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 381
Target Start/End: Complemental strand, 37824504 - 37824248
Alignment:
Q  145 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 244  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||||||||| ||||||||| ||    
T  37824504 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttcttatttatatttatcatcta 37824405  T
Q  245 ataaattagttggcccaat----------atc----------caaaattgagtattgtggatttaaataataacatgttagatggaacaaatcctcattg 324  Q
    | ||| |||||||||||||          |||          ||||||||||||||||||||||||    |||||||||| ||||||||| ||| |||||    
T  37824404 acaaactagttggcccaattccaattgaaatcacaaaacgttcaaaattgagtattgtggatttaagctttaacatgttaaatggaacaattccacattg 37824305  T
Q  325 gtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    |||||||| ||||  ||| || |||||||||  |||||| |||||||||||||||||    
T  37824304 gtgttattctttgccttcgttgttagagttgggcctcagcgacaaccacctcacagg 37824248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 37640312 - 37640225
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||||||||||||||||||| | ||||||||    
T  37640312 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagtgacaacaatctcacagg 37640225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 37400219 - 37400283
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||    
T  37400219 caactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaa 37400283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37703421 - 37703357
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    ||||||||| ||||||||||||||||||| ||||||| |||||| |||||| |||||||||||||    
T  37703421 caactaacatatttggacctttcatttaataaacttaacggtgagatctcaccattactttcaaa 37703357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37712377 - 37712313
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    |||||||||||||||||||||||||| || ||||||| |||||| |||||| |||||||||||||    
T  37712377 caactaacacatttggacctttcattgaataaacttaacggtgagatctcaccattactttcaaa 37712313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 263
Target Start/End: Original strand, 37400363 - 37400481
Alignment:
Q  145 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 244  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||||||| ||    
T  37400363 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttatcatcta 37400462  T
Q  245 ataaattagttggcccaat 263  Q
    | ||| |||||||||||||    
T  37400463 acaaactagttggcccaat 37400481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37640625 - 37640561
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    ||||||||| ||||||||||||||||||| |||||||  ||||| |||||| |||||||||||||    
T  37640625 caactaacatatttggacctttcatttaataaacttaatggtgagatctcaccattactttcaaa 37640561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 37400532 - 37400619
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||||||||||||  ||||| | ||||||||    
T  37400532 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttgtacctcagcaacaacaatctcacagg 37400619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 37436147 - 37436060
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    ||||||||||| ||||||||| ||| || |||||||||||||||  ||| || |||||||||||||||  | ||||||| ||||||||    
T  37436147 ataacatgttaaatggaacaattccacagtggtgttattatttgccttcattgttagagttgtacctccattacaaccatctcacagg 37436060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 37533540 - 37533453
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||||||  |||||||  ||||||||||||||||    
T  37533540 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttacacctcagcaacaaccacctcacagg 37533453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 37712064 - 37711977
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    ||||||||||| ||||||||| ||| || |||||||||| ||||  ||| || |||||||||  |||||| |||||||||||||||||    
T  37712064 ataacatgttaaatggaacaattccacagtggtgttattctttgccttcattgttagagttgggcctcagcgacaaccacctcacagg 37711977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 181 - 263
Target Start/End: Complemental strand, 37429305 - 37429223
Alignment:
Q  181 acaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 263  Q
    ||||| ||| |||| ||||||||||| |||||| |||| ||||||   ||||||||||| ||||||||||||| |||||||||    
T  37429305 acaggccaagttccatcatcattgtttcatctaactcagctttctatgttagatttatcgtttaataaattagatggcccaat 37429223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 263
Target Start/End: Complemental strand, 37697396 - 37697278
Alignment:
Q  145 aaattagaatatttagatatttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcattta 244  Q
    ||||| ||||||||||   |||||||||||||| | ||||| ||| |||| |||||| | || |||||| | || |||||| |||||| |||||||||||    
T  37697396 aaattggaatatttagcactttcctctaacaacctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttaggtttatcattta 37697297  T
Q  245 ataaattagttggcccaat 263  Q
    | ||| ||||||| |||||    
T  37697296 acaaactagttgggccaat 37697278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 37436297 - 37436198
Alignment:
Q  164 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 263  Q
    ||||||| |||| | | ||||| ||| |||| |||||| | || |||||| | || |||||| ||||||||||||||||||| ||| |||||||||||||    
T  37436297 tttcctccaacagcctaacaggccaagttccatcatcactttttcatctaccccacctttctcatttagatttatcatttaacaaactagttggcccaat 37436198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 381
Target Start/End: Complemental strand, 37703108 - 37703021
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaaccacctcacagg 381  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||| ||||  |||| | |||||||||||||||||    
T  37703108 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagggttggtcctcggcgacaaccacctcacagg 37703021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 363
Target Start/End: Complemental strand, 37594764 - 37594695
Alignment:
Q  294 ataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcag 363  Q
    ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || ||||| |||||||||||    
T  37594764 ataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagaattgtacctcag 37594695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37533853 - 37533789
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    ||||||||| ||||||| ||||||  ||| ||||||| |||||| |||||| |||||||||||||    
T  37533853 caactaacatatttggatctttcacataataaacttaacggtgagatctcaccattactttcaaa 37533789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37697540 - 37697476
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    ||||||||| ||||||| ||||||  ||| ||||||| |||||| |||||| |||||||||||||    
T  37697540 caactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaa 37697476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 37533690 - 37533591
Alignment:
Q  164 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 263  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| ||||||  ||||| |||||||| ||| ||| ||||||| |||||    
T  37533690 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcacctttctattttaggtttatcatataacaaactagttgggccaat 37533591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 263
Target Start/End: Complemental strand, 37712214 - 37712115
Alignment:
Q  164 tttcctctaacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 263  Q
    |||||||||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||  ||| ||| |||||||||||||    
T  37712214 tttcctctaacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcagataacaaactagttggcccaat 37712115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37392365 - 37392421
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcatta 57  Q
    ||||||||||||||||||||||||   || ||||||| |||||| |||||| |||||    
T  37392365 caactaacacatttggacctttcacaaaataaacttaacggtgagatctcaccatta 37392421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 263
Target Start/End: Complemental strand, 37640455 - 37640363
Alignment:
Q  171 taacaacattacaggtcaaattccctcatcattgttccatctagctcaactttcttatttagatttatcatttaataaattagttggcccaat 263  Q
    ||||||| | ||||| ||| |||| |||||| | || |||||| |||| |||||| ||||| ||||| ||| ||| ||| |||||||||||||    
T  37640455 taacaacctaacaggccaagttccatcatcactttttcatctacctcatctttctcatttatatttagcatataacaaactagttggcccaat 37640363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 37824648 - 37824580
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaatctc 69  Q
    ||||||||| ||||||||||||||   || || |||| |||||| |||||| ||||||||||||| |||    
T  37824648 caactaacatatttggacctttcacaaaataagcttaacggtgagatctcaccattactttcaaacctc 37824580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 14553577 - 14553463
Alignment:
Q  267 caaaattgagtattgtggatttaaataataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtga 366  Q
    ||||||||||   ||||||||||| | ||||||||||| ||||||||| ||| ||||||||||||| ||||  ||| || |||||||| | |||||| ||    
T  14553577 caaaattgagctatgtggatttaagttataacatgttaaatggaacaattccacattggtgttattctttgccttcgttgttagagttatccctcagcga 14553478  T
Q  367 caaccacctcacagg 381  Q
    |||||||||||||||    
T  14553477 caaccacctcacagg 14553463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 16842283 - 16842347
Alignment:
Q  1 caactaacacatttggacctttcatttaacaaacttaccggtgaaatctcatcattactttcaaa 65  Q
    ||||||||| ||||||| ||||||  ||| ||||||| |||||| |||||| |||||||||||||    
T  16842283 caactaacatatttggatctttcaaataataaacttaacggtgagatctcaccattactttcaaa 16842347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 24217458 - 24217538
Alignment:
Q  292 taataacatgttagatggaacaaatcctcattggtgttattatttgttttctttattagagttgtacctcagtgacaacca 372  Q
    ||||||||||||| ||||||||| ||| || ||||||||||  |||  ||| || ||||||||| | || |||||||||||    
T  24217458 taataacatgttaaatggaacaattccgcaatggtgttattccttgccttcgttgttagagttggatcttagtgacaacca 24217538  T

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