View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8173_low_9 (Length: 304)
Name: NF8173_low_9
Description: NF8173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8173_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 39133174 - 39133449
Alignment:
| Q |
17 |
agtttctccactatgttgcttattcccggacctaatttttaataatgatgagcttcccttaactcagctatctacagttgcagcagtgcaagagaagtac |
116 |
Q |
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| T |
39133174 |
agtttctccactatgttgcttattcccggacctaatttttaataatgatgagcttcccttaactcagctatctacagttgcagcagtgcaagagaagtac |
39133273 |
T |
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| Q |
117 |
atgaaggatgatgaaaatattgatgatgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttcatt |
216 |
Q |
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| T |
39133274 |
atgaaggatgatgaaaatattgatgatgattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttcatt |
39133373 |
T |
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| Q |
217 |
catgttaagttgcatttgtgttttgtacttctgcttctgtaagttctgaaaccaatgtgaacattattaatagtct |
292 |
Q |
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| T |
39133374 |
catgttaagttgcatttgtgttttgtacttctgcttctgtaagttctgaaaccaatgtgaacattattaatagtct |
39133449 |
T |
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Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 44 - 243
Target Start/End: Original strand, 26059346 - 26059542
Alignment:
| Q |
44 |
ggacctaatttttaataatgatgagcttcccttaactcagctatctacagttgcagcagtgcaagagaagtacatgaaggatgatgaaaatattgatgat |
143 |
Q |
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|||| |||||||||| || |||||| ||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||| |
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| T |
26059346 |
ggacataatttttaaaaacgatgagtttcccttaactcagcaatctacagttgcagaagtgcaagagaaatacataaaggatgatgaaaatat---tgat |
26059442 |
T |
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| Q |
144 |
gattgatgtggaaacgcttattattttcttgcagcagtgcaaggtaatgaccacctggtaattttacttca-ttcatgttaagttgcatttgtgttttgt |
242 |
Q |
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| T |
26059443 |
gattgatgtggaaatgcttattatttt-tggcagcagtgcaggggaacgaccacttggtaattttacttcatttcttattaagttgcttttgtgttttgt |
26059541 |
T |
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