View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8174_high_1 (Length: 588)
Name: NF8174_high_1
Description: NF8174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8174_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 547; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 2215486 - 2214917
Alignment:
| Q |
1 |
attggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaatcaaaactctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215486 |
attggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaatcaaaactctga |
2215387 |
T |
|
| Q |
101 |
ctttcaccctgtagcaagtattaaaagtcaaattaggaatggaaaccacaatatgtttatagaagtagcaaaagagacattaatttctgctagccatact |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215386 |
ctttcaccctgtggcaagtattaaaagtcaaattaggaatggaaaccacaatatgtttatagaagtagcaaaagagacattaatttctgctagccatact |
2215287 |
T |
|
| Q |
201 |
tgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaaacaatacattagtttccattgacctgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2215286 |
tgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaaacaatgcattagtttccattgacctgat |
2215187 |
T |
|
| Q |
301 |
atcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacattccgctattacttagactaactgctggtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2215186 |
atcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacattccgctattacttagactaactgccggtg |
2215087 |
T |
|
| Q |
401 |
gaccaagatagggatacaactcaaccaactatttatgctgcaaaggggactcagcaattgcaggcaatgccaattgattatacatggagcagctttcatg |
500 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2215086 |
gaccaagatagtgatacaactcaaccaactatttatgctgcaaagggg-ctcagcaattgcaggcaatgccaattgattatacatggagcagctttcatg |
2214988 |
T |
|
| Q |
501 |
tccaattttcaagtaagagtagaacgagtaataatacatgaaatgaataactcaccaattgtaaaaattca |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214987 |
tccaattttcaagtaagagtagaacgagtaataatacatgaaatgaataactcaccaattgtaaaaattca |
2214917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 2202889 - 2202322
Alignment:
| Q |
1 |
attggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaatcaaaactctga |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
2202889 |
attggatatcaatacccccttggggtcaccagtagttccgctagtatacattattgtacagatatcgcttcttttctttacaggtaaatcaaaactatga |
2202790 |
T |
|
| Q |
101 |
ctttcaccctgtagcaagtattaaaagtcaaattaggaatggaaaccacaatatgtttatagaagtagcaaaagagacattaatttctgctagccatact |
200 |
Q |
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|||| ||||||| ||||||||||||| |||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |
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| T |
2202789 |
cttttaccctgtggcaagtattaaaaatcaaataaggaatagaaaccacaatatgtctacagaagtagcaaaagagacattaatttctgcaagccatact |
2202690 |
T |
|
| Q |
201 |
tgtaatgaggtttagaaaaataacttctaatgcatatgtatctacaaaaattgacccaagtcaactattcaaacaatacattagtttccattgacctgat |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||||||||||||||| |
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| T |
2202689 |
tgtaatgaggtttagaaaaataacttttaatgcatatgtatctataaaaattgacccaagtcaactaaccaatcaatgcataagtttccattgacctgat |
2202590 |
T |
|
| Q |
301 |
atcatccttatttttcttacttgaattgcgtaacaactaacaattatgttaacttatttctttccacacattccgctattacttagactaactgctggtg |
400 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||| | | |
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| T |
2202589 |
atcatccttatttttcttacttgaattgc-------ataacaagtatgttaacttatttctttccacacattccactagtacttaggctaactgccagag |
2202497 |
T |
|
| Q |
401 |
gaccaagatagggatacaactcaaccaactatttatgctgcaaaggggactc--agcaattgcaggcaatgccaattgattatacatggagcagctttca |
498 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
2202496 |
gaccgagatagtgatacaactcaaccaactatttatgctgcataggggactcagagaaattgcaggcaatgccaattaattatacaaggagcagctttca |
2202397 |
T |
|
| Q |
499 |
tgtccaattttcaagtaagagtagaacgagta--ataatacatgaaatgaataactcaccaattgtaaaaattca |
571 |
Q |
| |
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|||||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
2202396 |
tgtccaatttacaagtaagagtagaaagagtaatataacacatgaaatgaataactcaccaattgtaaaaattca |
2202322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 94
Target Start/End: Original strand, 41931345 - 41931437
Alignment:
| Q |
2 |
ttggatatcaatactcccttggggtcaccagtagttccgctagtatacattattgtacaaatatcgcttcttttctttacaggtaaatcaaaa |
94 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| || || |||||||||||||| || |||||| | || |||||||| | ||||||| |
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| T |
41931345 |
ttggatatcaatactcccttgggatcaccggttgttccacttgtgtacattattgtacatatgtcgcttttcttttttacaggaagatcaaaa |
41931437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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