View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8174_low_2 (Length: 302)
Name: NF8174_low_2
Description: NF8174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8174_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 7534352 - 7534620
Alignment:
| Q |
18 |
cccgtatctgcaatatagccagcttccttcatttgcactctcaaacctctaagtaaagcacatatcttataattttttggatcgtaagcatctctatctc |
117 |
Q |
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| T |
7534352 |
cccgtatctgcaatatagccagcttccttcatttgcactctcaaacctctaagtaaagcacatatcttataattttttggatcgtaagcatctctatctc |
7534451 |
T |
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| Q |
118 |
gaaattcatggacttgactctgaacttctagatgattatttattgttgatttgttctgctctgaaatttctccaagtaaaaggccagctttagctttctc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7534452 |
gaaattcatggacttgactctgaacttctagatgattatttattgttgatttgttctgctctgaaatttctccaagtaaaaggccagctttagctttctc |
7534551 |
T |
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| Q |
218 |
attcaaacgagaaggatccaacttcataactagttcagcacaacgatcccccaactcaatgtttccatg |
286 |
Q |
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| T |
7534552 |
attcaaacgagaaggatccaacttcataactagttcagcacaacgatcccccaactcaatgtttccatg |
7534620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 7448809 - 7449082
Alignment:
| Q |
24 |
tctgcaatatagccagcttccttcatttgcactctcaaacctctaagtaaagcacatatcttataattttttggatcgtaagcatctctatctcgaaatt |
123 |
Q |
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| T |
7448809 |
tctgcaatatagccatcttctttcatttgctctctcaaacctctaagcaaagtataaatcttatcactttttggatcggacgtatctccatttcgaaatt |
7448908 |
T |
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| Q |
124 |
catggacttgactctgaacttctagatgattatttattgttgatttgttctgctc------------------tgaaatttctccaagtaaaaggccagc |
205 |
Q |
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| T |
7448909 |
catggactcgactctgaccttttggat------ttatcgttaatttgttctgctcattcttttttattaagtctgaattttctccaagtaaaaggccagc |
7449002 |
T |
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| Q |
206 |
tttagctttctcattcaaacgagaaggatccaacttcataactagttcagcacaacgatcccccaactcaatgtttccatg |
286 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
7449003 |
tttagctttctcattcaaacaagaaggatccaacttctcaactagttcagcacaac-atcccccaactcagtgtttccatg |
7449082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 18663977 - 18664071
Alignment:
| Q |
192 |
agtaaaaggccagctttagctttctcattcaaacgagaaggatccaacttcataactagttcagcacaacgatcccccaactcaatgtttccatg |
286 |
Q |
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|||||||| ||| |||| | ||| |||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| |||| |||||||||| |
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| T |
18663977 |
agtaaaagaccaacttttgatttttcattcaaacgagatggatctaacttctcaaccagttcagcacaacgatcccccagctcagtgtttccatg |
18664071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 18663791 - 18663837
Alignment:
| Q |
24 |
tctgcaatatagccagcttccttcatttgcactctcaaacctctaag |
70 |
Q |
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| T |
18663791 |
tctgcaatatagccagcttctttcatctgcaccctcaaacgtctaag |
18663837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 286
Target Start/End: Complemental strand, 15079827 - 15079757
Alignment:
| Q |
216 |
tcattcaaacgagaaggatccaacttcataactagttcagcacaacgatcccccaactcaatgtttccatg |
286 |
Q |
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|||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| |||| |||||||||| |
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| T |
15079827 |
tcattcaaacgagatggatctaacttctcaaccagttcagcacaacgatcccccagctcagtgtttccatg |
15079757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 15080037 - 15079984
Alignment:
| Q |
24 |
tctgcaatatagccagcttccttcatttgcactctcaaacctctaagtaaagca |
77 |
Q |
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|||||||||||||||||||| ||||| ||||| ||||||| |||||| |||||| |
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| T |
15080037 |
tctgcaatatagccagcttctttcatctgcaccctcaaacgtctaagcaaagca |
15079984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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