View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8174_low_3 (Length: 250)
Name: NF8174_low_3
Description: NF8174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8174_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 20280005 - 20279768
Alignment:
| Q |
5 |
aaatattctcatgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaagcaaaag |
104 |
Q |
| |
|
||||||||| || || ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20280005 |
aaatattcttatcatgactatgatcatatatttctggatctattaaagataaaatatttccttccctccattgtatccagacctaaatgaaaagcaaaag |
20279906 |
T |
|
| Q |
105 |
caaatttcaaatatttgtaagttgcggcagcaaaaggaaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactca |
204 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20279905 |
caaatttcaaatatttgtaagttgcggtagcaaaaggaaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactca |
20279806 |
T |
|
| Q |
205 |
gagcatgctcattgtcataaaagcttgagtttcttctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20279805 |
gagcatgctcattgtcataaaagcttgagtttcttctc |
20279768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 20304201 - 20303968
Alignment:
| Q |
16 |
tgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaag--caaaagcaaatttca |
113 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |||| ||| ||||| |
|
|
| T |
20304201 |
tgatgactatgatcatatatttctggatctattaaagataacatattttcttccctccattgtatccagacctaaatgaaaagaaaaaaatcaagtttca |
20304102 |
T |
|
| Q |
114 |
aatatttgtaagttg---cggcagcaaaagg--aaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactcagagc |
208 |
Q |
| |
|
|||||||||||||| | ||||||| | | |||||| || | ||||| || || | |||||||||| ||||||||||||| ||||||| | || |
|
|
| T |
20304101 |
gatatttgtaagttgcatcagcagcaataagcaaaaaaagagagtgttattaagtcaaaatcgaactgttaagtcttacaaatcctagaagactcggtgc |
20304002 |
T |
|
| Q |
209 |
atgctcattgtcataaaagcttgagtttcttctc |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20304001 |
atgctcattgtcataaaagcttgagtttcttctc |
20303968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 20062126 - 20062358
Alignment:
| Q |
5 |
aaatattctcatgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaagcaaaag |
104 |
Q |
| |
|
||||||||| ||||| ||||||| ||||||||||| |||||||| |||||||||||| ||||||||||||||| ||| |||||||| ||||||| | |
|
|
| T |
20062126 |
aaatattcttatgatgactatgatcatatatttctgtatctattaaggataaaatattttcttccctccattgtaaccatacctaaataaaaagcataca |
20062225 |
T |
|
| Q |
105 |
caaatttcaaatatttgtaagttgcggcagcaaaaggaaaaaatagcatattattgagccagtaatgaactgttaatgcttacaaatcctacaagactca |
204 |
Q |
| |
|
|| ||||| |||| |||| || | ||||||||||||||| || | |||||||| | ||| |||| | || |||||||||||||| |||| ||| |
|
|
| T |
20062226 |
catgtttcatatatcggtaattttcatcagcaaaaggaaaaaggag--tgttattgagtaaaaaattaactataaaggcttacaaatcctaaaagagtca |
20062323 |
T |
|
| Q |
205 |
gagcatgctcattgtcataaaagcttgagtttcttctc |
242 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20062324 |
gag---tctcattgtcataaaagcttgagtttcttctc |
20062358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 20289581 - 20289521
Alignment:
| Q |
182 |
gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctc |
242 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
20289581 |
gcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaagcttgagtttcttctc |
20289521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 20004940 - 20005016
Alignment:
| Q |
15 |
atgataactatgaatatatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaa |
91 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||| |||||| |||||| |
|
|
| T |
20004940 |
atgatgactatgatcatatatttctggttctatcaaagataaaatattgtcttccttccattgaatccaagcctaaa |
20005016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 20289746 - 20289679
Alignment:
| Q |
30 |
atatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaa |
97 |
Q |
| |
|
||||||||||| | ||| |||||||||||||| |||||| ||||||||||||||||||| ||||||| |
|
|
| T |
20289746 |
atatatttctgtatttataaaagataaaatattgccttccttccattgtatccaaacctagatgaaaa |
20289679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 20264346 - 20264286
Alignment:
| Q |
182 |
gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctc |
242 |
Q |
| |
|
|||||||||||||| |||||| ||| |||||||| |||||||| ||||||||||||||| |
|
|
| T |
20264346 |
gcttacaaatcctaaaagactaagattatgctcatcatcataaaaacttgagtttcttctc |
20264286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 40823398 - 40823465
Alignment:
| Q |
30 |
atatatttctggttctattaaagataaaatatttccttccctccattgtatccaaacctaaatgaaaa |
97 |
Q |
| |
|
|||||||||| | ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
40823398 |
atatatttcttgatctataaaagataaaatattgccttccctccattgtatccaaacctacatgaaaa |
40823465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 40823570 - 40823630
Alignment:
| Q |
182 |
gcttacaaatcctacaagactcagagcatgctcattgtcataaaagcttgagtttcttctc |
242 |
Q |
| |
|
|||||||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
40823570 |
gcttacaaatcctaaaagggtcagtgcatgctcattgtcataaaatcttgagtttcttctc |
40823630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University