View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8174_low_4 (Length: 224)
Name: NF8174_low_4
Description: NF8174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8174_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 49917993 - 49918176
Alignment:
| Q |
13 |
agatgaaccaggagtgtatagggtgtggatgccaaatggtaaaacaccaggattagcaatatctagagcctttggtgactattgtatgaaggactatggt |
112 |
Q |
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| T |
49917993 |
agatgaaccaggagtgtatagggtgtggatgccaaatggtaaaacaccaggattagcaatatctagagcctttggtgactattgtatgaaggactatggt |
49918092 |
T |
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| Q |
113 |
ctaatctcagtgccagatgtgacacatagaaaacttaccactggggatcaatttatcatcttagcaacagatggggtatgtttc |
196 |
Q |
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| T |
49918093 |
ctaatctcagtgccagatgtgacacatagaaaacttaccactggggatcaatttatcatcttagcaacagatggggtatgtttc |
49918176 |
T |
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Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 13734597 - 13734418
Alignment:
| Q |
13 |
agatgaaccaggagtgtatagggtgtggatgccaaatggtaaaacaccaggattagcaatatctagagcctttggtgactattgtatgaaggactatggt |
112 |
Q |
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| T |
13734597 |
agatgaaccaggagtatatagagtttggatgccaaatggtaagagtccaggactagcaatatcaagagcatttggtgattattgtgtaaaagactttgga |
13734498 |
T |
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| Q |
113 |
ctaatctcagtgccagatgtgacacatagaaaacttaccactggggatcaatttatcatcttagcaacagatggggtatg |
192 |
Q |
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||||||||||| |||||||||||||| |||||||| || ||| |||||||||| ||||||||||||||||||||||||| |
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| T |
13734497 |
ctaatctcagtaccagatgtgacacaaagaaaactcactactatggatcaatttgtcatcttagcaacagatggggtatg |
13734418 |
T |
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