View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8175_high_1 (Length: 702)
Name: NF8175_high_1
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8175_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 34851704 - 34851178
Alignment:
| Q |
1 |
aggggcaagaattcagaagttgaaaatgcagagggacaagaacaacagaaagaggtagagaaaaaaccaagcaccggtgtgaacagtggagggccgatgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34851704 |
aggggcaagaattcagaagttgaaaatgcagagggacaagaacaacagaaagaggtagagaaaaaaccaagcaccggtgtgaacagtggagggccgatgg |
34851605 |
T |
|
| Q |
101 |
gtcctcgggacttagaaattaggacaaacaagaaaattgaagcagtgagtgagagtaaactatatgctgcggagaaaaggaagaagaggaagagtcaaga |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34851604 |
gtcctctggacttagaaattaggacaaacaagaaaattgaagcagtgagtgagagtaaactatatgctgtggagaaaaggaagaagaggaagagtcaaga |
34851505 |
T |
|
| Q |
201 |
tggtgaagagaggatcgaaagtaggttgggggaacattctaagaagaaaatgaaacactagggttaggcttaaatttaggtctttattaaatgaacttga |
300 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34851504 |
tggtgaagagaggattgaaagtagtttgggggaacattctaagaagaaaatgaaacactagggttaggcttaaatttaggtctttattaaatgaacttga |
34851405 |
T |
|
| Q |
301 |
tagttgttaaatctttgttaattttgattagtaattttcacttgaaaggttgcttacattgtggcatcacttttatactatcttagaatataagaggagt |
400 |
Q |
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| T |
34851404 |
tagttgttaaatctttgttaattttgattagtaattttcacttgaaaggttgcttacattgtggcatcacttttatactatcttagaatataagaggagt |
34851305 |
T |
|
| Q |
401 |
ttgcttcttgattcctctcctacattgttatactagggttatgcttaaatttatgtgttaactaaattcacttgatagttgttaaatatttttcaaattt |
500 |
Q |
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| T |
34851304 |
ttgcttcttgattcctctcctacattgttatactagggttatgcttaaatttatgtgttaactaaattcacttgatagttgttaaatatttttcaaattt |
34851205 |
T |
|
| Q |
501 |
gatgaagaattttcacttgtaaagttg |
527 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
34851204 |
gatgaagaattttcacttgtaaggttg |
34851178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 257 - 689
Target Start/End: Complemental strand, 34851273 - 34850844
Alignment:
| Q |
257 |
actagggttaggcttaaatttaggtctttattaaatgaacttgatagttgttaaatctttgttaattttgattagtaattttcacttgaaaggttgctta |
356 |
Q |
| |
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|||||||||| ||||||||||| || || | ||||| |||||||||||||||||| ||| | || |||||| | |||||||||||| |||||||||| |
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| T |
34851273 |
actagggttatgcttaaatttatgtgttaactaaattcacttgatagttgttaaatatttttcaaatttgatgaagaattttcacttgtaaggttgcttg |
34851174 |
T |
|
| Q |
357 |
cattgtggcatcactttt-atactatc--ttagaatataagag-----gagtttgcttcttgattcctctcctacat------tgttatactagggttat |
442 |
Q |
| |
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|||||| ||||||||||| ||||| || ||| |||| | || || ||||||||||||||||| |||||||| ||||||||||| | ||| |
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| T |
34851173 |
cattgttgcatcactttttatactgtcaattatcatattacagaatacgaatttgcttcttgattcctgtcctacatcgtttgtgttatactagtgctat |
34851074 |
T |
|
| Q |
443 |
gcttaaatttatgtgttaactaaattcacttgatagttgttaaatatttttcaaatttgatgaagaattttcacttgtaaagttgtgtacatagcggctt |
542 |
Q |
| |
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|| ||||||||| |||||| || |||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34851073 |
gcctaaatttat-----------------ttgatatttattaaatctttttcgaaattgatgaagaattttcacttgtaaagttgtgtacatagcggctt |
34850991 |
T |
|
| Q |
543 |
cactttttgtactcccataatatacaaagaatttgtttcttgatttctttgtaggcttacaactgttattgcaatgaaatgaaatgctgttttctattga |
642 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34850990 |
cactttttgtactcccataatatacaaagaatttgtttcttgatttctttgtaggcttacaactgttattgcaatgaaatgaaatgctgttttctattga |
34850891 |
T |
|
| Q |
643 |
ttgcaatcattagttattggtgatagccaatgactaatgtagaaagt |
689 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34850890 |
ttgcaatcattagttattggtgatagccaatgactaatgtagaaagt |
34850844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 432 - 549
Target Start/End: Complemental strand, 34851448 - 34851331
Alignment:
| Q |
432 |
actagggttatgcttaaatttatgtgttaactaaattcacttgatagttgttaaatatttttcaaatttgatgaagaattttcacttgtaaagttgtgta |
531 |
Q |
| |
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|||||||||| ||||||||||| || || | ||||| |||||||||||||||||| ||| | || |||||| | |||||||||||| || |||| || |
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| T |
34851448 |
actagggttaggcttaaatttaggtctttattaaatgaacttgatagttgttaaatctttgttaattttgattagtaattttcacttgaaaggttgctta |
34851349 |
T |
|
| Q |
532 |
catagcggcttcactttt |
549 |
Q |
| |
|
||| | ||| |||||||| |
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| T |
34851348 |
cattgtggcatcactttt |
34851331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 6e-39; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 301 - 527
Target Start/End: Original strand, 4298359 - 4298592
Alignment:
| Q |
301 |
tagttgttaaatctttgttaattttgattagtaattttcacttgaaaggttgcttacattgtggcatcac-ttttatactatcttagaatataagaggag |
399 |
Q |
| |
|
|||||||||||||||| | ||||||||| || ||||||||| || ||||||||||||||||||||||||| |||| ||||||| || || |||||||| |
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| T |
4298359 |
tagttgttaaatctttttcaattttgatcaggaattttcacgtgcaaggttgcttacattgtggcatcactttttgtactatcatataacataagaggga |
4298458 |
T |
|
| Q |
400 |
tttgcttcttgattcctctcctacattgtt------atactagggttatgcttaaatttatgtgttaactaaattcacttgatagttgttaaatattttt |
493 |
Q |
| |
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||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| |||| |||| | ||||||||| | |||||||| |||| |
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| T |
4298459 |
tttgcttattgattcctctattacattgtttttgtcatactagggttatgcttaaatttacatgtttactagactcacttgatcgctgttaaatcgtttt |
4298558 |
T |
|
| Q |
494 |
caaatttgatgaagaattttcacttgtaaagttg |
527 |
Q |
| |
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|| ||||||| ||||||||||||||| |||| |
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| T |
4298559 |
ggaaattgatgacaaattttcacttgtaaggttg |
4298592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 4298017 - 4298090
Alignment:
| Q |
15 |
agaagttgaaaatgcagagggacaagaacaacagaaagaggtagagaaaaaaccaagcaccggtgtgaacagtg |
88 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||| |||||||||| ||||| |||||||| |||| |
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|
| T |
4298017 |
agaagttggaaatgtgaagggacaagaacaacataaagaggtggagaaaaaactaagcaatggtgtgaagagtg |
4298090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 555
Target Start/End: Original strand, 4298359 - 4298438
Alignment:
| Q |
476 |
tagttgttaaatatttttcaaatttgatgaagaattttcacttgtaaagttgtgtacatagcggcttcactttttgtact |
555 |
Q |
| |
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|||||||||||| |||||||| |||||| | |||||||||| || || |||| ||||| | ||| |||||||||||||| |
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| T |
4298359 |
tagttgttaaatctttttcaattttgatcaggaattttcacgtgcaaggttgcttacattgtggcatcactttttgtact |
4298438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 4298573 - 4298613
Alignment:
| Q |
333 |
aattttcacttgaaaggttgcttacattgtggcatcacttt |
373 |
Q |
| |
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|||||||||||| ||||||||||||| |||||| ||||||| |
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|
| T |
4298573 |
aattttcacttgtaaggttgcttacaatgtggcgtcacttt |
4298613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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