View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8175_high_19 (Length: 417)

Name: NF8175_high_19
Description: NF8175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8175_high_19
NF8175_high_19
[»] chr1 (10 HSPs)
chr1 (19-402)||(47712871-47713254)
chr1 (26-386)||(47759802-47760162)
chr1 (102-386)||(47745479-47745754)
chr1 (102-392)||(47717684-47717965)
chr1 (334-386)||(47704889-47704941)
chr1 (26-62)||(47745794-47745830)
chr1 (21-59)||(47718008-47718046)
chr1 (233-274)||(47811738-47811779)
chr1 (26-58)||(6521779-6521811)
chr1 (234-274)||(6521987-6522027)
[»] chr5 (1 HSPs)
chr5 (341-386)||(28830931-28830976)


Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 47713254 - 47712871
Alignment:
Q  19 aggactacatgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgga 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713254 aggactacatgttgcgttactcaaaccaatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtgga 47713155  T
Q  119 tctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgat 218  Q
    || |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713154 tccatttaatcgagttcttggaaacttgatgaggaaactgagagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgat 47713055  T
Q  219 gtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47713054 gtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaa 47712955  T
Q  319 ttccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47712954 ttccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctg 47712871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 26 - 386
Target Start/End: Complemental strand, 47760162 - 47759802
Alignment:
Q  26 catgttgcgttactcaaaccgatcaatatttggcattcttgaatggtcaccaaagttttatatgtcgaacccgaacaatgtaaccgaggtggatctattt 125  Q
    |||||||||||||||||||||||||||||| ||| || | ||| | ||||||||||||||||||| ||||    | |||||||| |||||||||| ||||    
T  47760162 catgttgcgttactcaaaccgatcaatattcggcgttatggaaggttcaccaaagttttatatgtggaacatatataatgtaacagaggtggatcaattt 47760063  T
Q  126 aatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctgcggataatgcaactgatgtgaatt 225  Q
    || | ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||| |||||| | ||||||||||||||||| ||||    
T  47760062 aaccaagttcttgggaacttgatgaggaaactgaaagagaaagctgcatcaagtgattctcgtcgtaaatttgctacagataatgcaactgatgtaaatt 47759963  T
Q  226 tgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaat 325  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||   |||||| ||||| |||||||     
T  47759962 tgaattttcaaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaag 47759863  T
Q  326 ttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 386  Q
    ||  ||| |||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  47759862 ttgttgtaataacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaa 47759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 102 - 386
Target Start/End: Complemental strand, 47745754 - 47745479
Alignment:
Q  102 aatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctg 201  Q
    ||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||     
T  47745754 aatgtaaccgatgtggctcaatttaatcaagttcttgggaacttgatgaggaaactcaatgaaatagctgcatcaggtgattctcgtcgtaagtttgcta 47745655  T
Q  202 cggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttaga 301  Q
    | | ||||||||||         ||||||||| |||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  47745654 ccgctaatgcaact---------ttgaattttgaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttaga 47745564  T
Q  302 gtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 386  Q
    |  |||||| ||||||| ||||| ||  | |||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  47745563 gcgtgctatttcagaaactccaagttttttttataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaa 47745479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 102 - 392
Target Start/End: Complemental strand, 47717965 - 47717684
Alignment:
Q  102 aatgtaaccgaggtggatctatttaatcgagttcttggaaacttgatgaggaaactaaaagaaatagctgcatcaagtgattctcgtcttaagtttgctg 201  Q
    |||| |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||     
T  47717965 aatgcaaccgaggtggatcaatttaatcaagttcttgggaacttgatgaggaaactcaaagaaatagcagcatcaagtgattctcgtcgtaagtttgcta 47717866  T
Q  202 cggataatgcaactgatgtgaatttgaattttcaaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttaga 301  Q
    | | ||||||||||         ||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  47717865 ccgctaatgcaact---------ttgaattttgaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttaga 47717775  T
Q  302 gtttgctatatcagaaattccaatttactgttataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctat 392  Q
    |  |||||| ||||||||||| ||||| | | |||||||| ||||  ||| |||| ||||||||||||| ||||||||| ||||| |||||    
T  47717774 gcgtgctatttcagaaattcctatttattttaataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctat 47717684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 47704941 - 47704889
Alignment:
Q  334 ataacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 386  Q
    |||||||||||||| | |||||| ||||||||||||| |||||||||||||||    
T  47704941 ataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaa 47704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 47745830 - 47745794
Alignment:
Q  26 catgttgcgttactcaaaccgatcaatatttggcatt 62  Q
    |||||||||||||||||||||||||||||||||||||    
T  47745830 catgttgcgttactcaaaccgatcaatatttggcatt 47745794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 47718046 - 47718008
Alignment:
Q  21 gactacatgttgcgttactcaaaccgatcaatatttggc 59  Q
    |||| |||||||||||||||||||||||||||||| |||    
T  47718046 gactgcatgttgcgttactcaaaccgatcaatattcggc 47718008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Original strand, 47811738 - 47811779
Alignment:
Q  233 tcaaaccatatatggtcttgtgcagtgtacacctgatttgtc 274  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  47811738 tcaaacaataaatggtcttgttcagtgtacacctgatttgtc 47811779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 6521779 - 6521811
Alignment:
Q  26 catgttgcgttactcaaaccgatcaatatttgg 58  Q
    ||||||||||||||||||||| |||||||||||    
T  6521779 catgttgcgttactcaaaccgttcaatatttgg 6521811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 6521987 - 6522027
Alignment:
Q  234 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 274  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  6521987 caaaccatatatggtcttgttcaatgcacacctgatttgtc 6522027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 28830976 - 28830931
Alignment:
Q  341 gattggttgtagagttgtcaaaccaagttgtaatattagatatgaa 386  Q
    |||||||  ||||||| | |||||||||||||||||||||||||||    
T  28830976 gattggtgctagagttatgaaaccaagttgtaatattagatatgaa 28830931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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